Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01112 ATGGCGTCTGTGAATCCGCAGCCTCTGCAGTTCCAGGACCCTGCGATACCTGTGGATGACGACGATGACGACAGTGATGGTGCTGATGATGATGCTATGGATGAGTTGGAGGATGCGCATGTTAGTTCAGTGAACGTCGTTGCTAATGCTGCGAGTGCGAGTCATGAAGCCGTGGCTGCTATGCCTTTGAGAACTAGCGAGCTTACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTTCAAGCCGTGTTGCTGCTCTTGGGAGGACCTGATGTGCAGGCAGGTGTGCCTGCAGTTGAATTACCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGCGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTGAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGATTCATCTAATTGGGATTCTGCACGGAGTTCTGCGCAAGATGGCACTTCTCATTCTGAATCTACGTAG 594 0.4848 MASVNPQPLQFQDPAIPVDDDDDDSDGADDDAMDELEDAHVSSVNVVANAASASHEAVAAMPLRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGPDVQAGVPAVELPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPDSSNWDSARSSAQDGTSHSEST 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01112 197 PANTHER GATA TRANSCRIPTION FACTOR 28 21 195 IPR045280 GO:0006355
Spst9g01112 197 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
Spst9g01112 197 MobiDBLite consensus disorder prediction 157 197 - -
Spst9g01112 197 MobiDBLite consensus disorder prediction 16 34 - -
Spst9g01112 197 MobiDBLite consensus disorder prediction 1 34 - -
Spst9g01112 197 Pfam tify domain 65 95 IPR010399 -
Spst9g01112 197 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Spst9g01112 197 MobiDBLite consensus disorder prediction 170 197 - -
Spst9g01112 197 Pfam CCT motif 129 170 IPR010402 GO:0005515
Spst9g01112 197 SMART tify_2 61 96 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01112 Spst-Chr9 10146006 10148943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01112 5 191 Tify Gene Family AT3G21175 46.114 2.34e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Spst9g01112 CCT 4.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01112 - - vun:114164157 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01132 8 10001363 10005451 Spst9g01112 9 10146006 10148943 PCT