Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01111 ATGTACGACCCGATGAACCAGATCGTCCCCGCCGAAGACAACGACGCCGCCGCCTCCGACCACCACATCCATTACAGCTCCCACACCATCGAAGACGTTGGCGCGGCCGTCGAAGACGTTTCCGCCGACTCCGTCTTCGTTCCACCCCCTGAAATCTCTATCCAGGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTTTATGTCTTCGATGCCGTTACGCCTGATAAGGTCCAAGCAGTGTTGTTGCTGTTGGGAGGAAGTGAACTAACTTCGGGCCCGCAATGTGCGGAGCTATCCCCTCAAAATCATACGGGTGCAGCAGAGTTTCCTGCAAGATGCAGTCTACCACAGCGAGCGGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGTCTGAATCTGATATTATTGATCCTGTCGATGTTTCCAAAGTAGTTAATAGTGGCCAGATGACCGCAATTGCCCTACTACAGAGTGGAGCTTCTTTGCTCCCAAATGCTGGTATTCGAGTGTTTTGCTGTAATGGTGCTGAGTGCCACAAAATAGCTCTTGTTTCCATAGCAGCTGCTATGCTTTCTGTAGCAGCCATTCTAATAAATAATGCTGCCTTGGTATTTTCAGTGGTAGTCATTCCAATCCATATTCTGCCATTGTCTATATTTGTTCCTGTGATGCATCGTAATAAGGGTCAATTTACATCGTCCAAGAAACAAGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGACAGGAAGCTGTTCAATCCGAAACCTCGTGCACACACTGTGGAACAAGTTCAAAATCCACACCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAGGAACACTCTCTAGCGCCACCTGAGCAGGTTGATGTGGGTAATAATGACTTGGACTGTCGGAGTGCTATCCCTGCACAACATAACAATCATGTTAATGAAACCAAAGCTTTGGATGAGTGA 1098 0.4809 MYDPMNQIVPAEDNDAAASDHHIHYSSHTIEDVGAAVEDVSADSVFVPPPEISIQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSGPQCAELSPQNHTGAAEFPARCSLPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRSESDIIDPVDVSKVVNSGQMTAIALLQSGASLLPNAGIRVFCCNGAECHKIALVSIAAAMLSVAAILINNAALVFSVVVIPIHILPLSIFVPVMHRNKGQFTSSKKQDGTNSWGSDQESGQEAVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQVDVGNNDLDCRSAIPAQHNNHVNETKALDE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01111 365 PANTHER GATA TRANSCRIPTION FACTOR 28 21 151 IPR045280 GO:0006355
Spst9g01111 365 ProSiteProfiles CCT domain profile. 120 162 IPR010402 GO:0005515
Spst9g01111 365 ProSitePatterns GATA-type zinc finger domain. 281 308 IPR000679 GO:0006355|GO:0043565
Spst9g01111 365 MobiDBLite consensus disorder prediction 251 298 - -
Spst9g01111 365 Gene3D - 272 330 IPR013088 GO:0006355|GO:0008270
Spst9g01111 365 Pfam tify domain 57 87 IPR010399 -
Spst9g01111 365 SMART tify_2 53 88 IPR010399 -
Spst9g01111 365 Pfam GATA zinc finger 281 317 IPR000679 GO:0006355|GO:0043565
Spst9g01111 365 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 275 326 - -
Spst9g01111 365 SMART GATA_3 275 328 IPR000679 GO:0006355|GO:0043565
Spst9g01111 365 MobiDBLite consensus disorder prediction 251 294 - -
Spst9g01111 365 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Spst9g01111 365 Pfam CCT motif 120 150 IPR010402 GO:0005515
Spst9g01111 365 CDD ZnF_GATA 280 326 IPR000679 GO:0006355|GO:0043565
Spst9g01111 365 ProSiteProfiles GATA-type zinc finger domain profile. 275 333 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01111 Spst-Chr9 10134835 10142927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01111 245 331 Tify Gene Family AT4G24470 72.414 4.38e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst9g01111 GATA 5.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01111 - - pvu:PHAVU_009G035400g 268.47