Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01096 ATGTCGGAGAGGAAGAACAAAGTGTATTTCACGGAAGAAGATGCTGTTGCACTCATGCAGAGGTACGACCCAACTACTGTGTTCACGTTACTTCAAGAAGTTGCGCATTACGCGCAGCCAAAGATTGATTGGAGCGAATTGGTGAAGAAAAGCGCCACTGGGATTTCTAATGTTAGGGAATATCAAATGCTGTGGCGGCATTTGGCCTATCGACATTCTTTGCCTGAAAATTTTGAAGTTGGGGCTGAACCTTTGGATGATGACAGTGACTTAGAATGTGAGCTGGAAGCACTACCCCCTGTAAATGTGGAATCTGCATCAGAGGCAGCTGCTTGTGTGAAGGTAATGATTGCTTCTCGCACACTAAGTGAATCTGCACCTAGTAGCTCAACGATCGAGGCTCCGTTAACAATAAATGTTCCAGTTTGCCATTCATCTAGAACTCTTGTTCAAAGTCCACAAACCTCTAATTTGATGCAAGGTACAAACATTGTTTTTCCGGTCACTGTTCAGAGACAAACATTGCCAACACATCCTGTACCATCAATTGATGGTATAGAAACTAAGGGAATAGTTGGTGGTAATCTAGCCTCCAAAAGAAAGCGAAAAACATGGTCAGAGGAAGAGGACATGCAACTACGAGCTGCTGTTCAGAGATGGGGTGAAGGGAATTGGGCAACCATGGCAAAGGGAGACAACTTTCCTATTAAGAGAAGTCCTACACAATTAGCACAGTCAGTTAACATGTCTGGTTATCACCAGTTTTCCCAGAGGTGGAGCATTTTACGAAAGAAAGATGGCAGTGTCAATTCTGGAACCATCTCAACCAGCACACAATATACTACTGCCGAACAGCTGGCAACCCGACACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGCGTGTCCGATCCTGGCGATATTATTTCTTTGCAGGTCATGTTCTCAACTGGTGCTAACATGGAGATGGCACAATCTGAGGGCAGCCTGGTGGAAATTTGTGAAAGTGCTGTTCGAAAGATTCTAACTGGAATCAAGGATCGTGGTGGCAGGGATGATGCAGAAGGGTTGTTTGGGGTTGCTAAGAGGATTGGGGCACGTCCTATGGTTGATATGGAAGTGGAAAGCAATGAACATCATGGGAAAACATTCCTTAATGGACCAGAACCGGAAAAAAATCTAGAGATCAAGAATCAGAATCAGCTAAACTGTGATGCATCAACCAAGTTGAGAAAAGAGTACGAAGAGCAAAGACTTAAGACATCCACGTCAGTTAAAACTCAAGTGCAGATTAGAAATACCGCGGAGAAGGTTGCCAGTAGTTTTGTACCACCTCAACAGCCATCTCAGCAAGCTTCTTTGTTGGGATCTTCTGATTCTCATGTAAAACCCAAATTTGTAGATGAAAAGCTAGTTTTGAAGGGAAATATAATTTCAAATCCTGTGCTAAAATCTACCTCAGCTGCTTCTGGGACACGAATTGATTCTCCTTCAAATACTATATCACAGTTTAAAATTGCTCCAGTAAAACACACTTTAGACCCTAAGCCTCCAGTGAGCTCTTTGACAAAACCATCCATTTCTACCAATTTGCCTTCTGACCCAAAGAACAAACCGGTTCCTCCTTTGGCTGATAAAGTTCAATTGAAGCAGGATGCTAATTCGTCAATAGAGTTTAGAGTTTCTGATCCCGGCTCCACACTGAAAGAGAAGGCACAAGAAAATGAACCTCCTAAAGTTACTATTGGAAGCCAGGTCAATAGCAACTTAGAGAAGGGAAGATTAGATATAGGTCAAGTGAAGATCATGCCTCTTGTTAAAATTAGTGATGGGGAGGATATTTTGAAAGATAAACCAAATCCAGAAGCAGATGAAAAACAAGCAAGTGCTACTATAGCAAATGAAATGAAGTGTGAAGACCAAAGAATTGTCAAGAATGTTACTGAGAATTGCAACCTGGACAAGGGAAGCCTAAATTTAGATCAAGACAAGAAGATAACTTCAACTAATGAAAGTTCAAACAATCAAAACATGACTGACAAAAATGTAAATTTGCCCGTACAGGATGAACGCAGCCAAAGTACCAAGGTGGAAAAACCTGATGGAGAATGTTGA 2133 0.4191 MSERKNKVYFTEEDAVALMQRYDPTTVFTLLQEVAHYAQPKIDWSELVKKSATGISNVREYQMLWRHLAYRHSLPENFEVGAEPLDDDSDLECELEALPPVNVESASEAAACVKVMIASRTLSESAPSSSTIEAPLTINVPVCHSSRTLVQSPQTSNLMQGTNIVFPVTVQRQTLPTHPVPSIDGIETKGIVGGNLASKRKRKTWSEEEDMQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQSVNMSGYHQFSQRWSILRKKDGSVNSGTISTSTQYTTAEQLATRHSLSLALDMPFKKLTAPGVSDPGDIISLQVMFSTGANMEMAQSEGSLVEICESAVRKILTGIKDRGGRDDAEGLFGVAKRIGARPMVDMEVESNEHHGKTFLNGPEPEKNLEIKNQNQLNCDASTKLRKEYEEQRLKTSTSVKTQVQIRNTAEKVASSFVPPQQPSQQASLLGSSDSHVKPKFVDEKLVLKGNIISNPVLKSTSAASGTRIDSPSNTISQFKIAPVKHTLDPKPPVSSLTKPSISTNLPSDPKNKPVPPLADKVQLKQDANSSIEFRVSDPGSTLKEKAQENEPPKVTIGSQVNSNLEKGRLDIGQVKIMPLVKISDGEDILKDKPNPEADEKQASATIANEMKCEDQRIVKNVTENCNLDKGSLNLDQDKKITSTNESSNNQNMTDKNVNLPVQDERSQSTKVEKPDGEC 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01096 710 SUPERFAMILY Homeodomain-like 200 245 IPR009057 -
Spst9g01096 710 Gene3D - 196 265 - -
Spst9g01096 710 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 230 IPR017930 -
Spst9g01096 710 MobiDBLite consensus disorder prediction 659 697 - -
Spst9g01096 710 MobiDBLite consensus disorder prediction 444 466 - -
Spst9g01096 710 ProSiteProfiles Myb-like domain profile. 197 242 IPR001005 -
Spst9g01096 710 SMART sant 201 253 IPR001005 -
Spst9g01096 710 MobiDBLite consensus disorder prediction 525 540 - -
Spst9g01096 710 MobiDBLite consensus disorder prediction 659 710 - -
Spst9g01096 710 MobiDBLite consensus disorder prediction 513 590 - -
Spst9g01096 710 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 697 - -
Spst9g01096 710 CDD SANT_TRF 203 264 - -
Spst9g01096 710 MobiDBLite consensus disorder prediction 444 464 - -
Spst9g01096 710 Pfam Myb-like DNA-binding domain 202 243 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01096 Spst-Chr9 9796807 9804349 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst9g01096 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01096 - - gmx:100805773 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01096 9 9796807 9804349 Spst9g01096 9 9796807 9804349 ECH
Spst8g01138 8 10090958 10094735 Spst9g01096 9 9796807 9804349 PCT