Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01089 ATGGTCTGTCCAGGTTCAACGCAATTGTCTCATGACGTTAGGCTCAGCAGTAATATTGGATTGTGTAGTTTCCATCGTCATAAGCGGATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCGTGTAGCTTGAAGCAAGACTCCTCAGCACTCCATCTTTTAAGTAGACTACGTGCCCCAATAAGGCATGTGCCTTCCAAATGTAGTGTTTTCATATGTCGGTCTGTCCTAATACCAGGTGGAGGGAGTGGGACTCCTCTCATGAAATCTGCTGGTGTTATTTTGACAAGGTCATATGCTGCTTTACAAGGAAACCCTGTTTTACTTCAATTGATCCCAGCTCTTGGCATCATTGCCTTTGCTGTTTGCGGTCTGGAGCCACTCCTACGACTCAGCAGGGTGTTGTTCCTCCAAAGAACTGACAGCAGTTGGAAGAAAAGTAGTTCGAGATATATTATGACATCTTATTTTCAGCCATTGTTGTTATGGACTGGGGCAATGCTCGTCTGCAGGGCATTGGATCCAATAGTCCTACCATCTAAGTCCAGCCAGGTTGTGAAGCAGCGGCTTCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGTTTAATTCAACAAGCACAAAAATTCTTTCTGGAGGCAAATGACTCCAGTGGTGCAAGAAATGTGGGCTTTGATTTTGCTGGGAAGGCAGTCTATACTGCTGTTTGGGTTGCTGCTGTGTCGTTGTTCATGGAGCTGTTAGGTTTCTCCACGCAGAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCAGGTCGTGAGATATTTACAAACTTTCTGTCAAGCATAATGATCCATGCAACTCGGCCATTTATTGTGAACGAGTGGATTCAAACGAAAATTGAAGGATATGAGGTTTCTGGGACAGTTGAGCATGTAGGATGGTGGTCACCAACCATTGTTAGAGGCGATGACCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTGAATGTTGTGAGAAATCTGACCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGAGGAAAGTTTTGTCCAAAAATCCTCAAGTAGAGCAGCAAAAATTGCATAGAAGGGTCTTCTTGGAGAATGTCAACCCTGAAAATCAGGCTCTTATGGTATTAATATCTTGCTTCGTGAAAACTTCTCATTTTGAAGAGTACCTGTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCCAGGCTAGCCACTCCCATCCGCACGGTACAGAAAATATACAGTGAGGCTGACTCAGAAAATATACCTTTTGGAGACACGATTTTCAGTCGATCTAGAGCTGCAAATCGCCCATTCCTACTTATAGAACCACCATATAAAGTTAATGGTGATGATAAAGTTAAACCCTCAACCCGGACAACTCGTGCAAATGAGGAAAAAGATTCCAAGATTGATGAAACCATGGCATCTGAAACCAAAGGAGACGAGGATTTTGCAGCAACATCTATCCCCTTGACCGATTTAAACAACTCCAAGGATAAACCCAAGTTGTTTTCTGAATCACAGCCTAAAAAGGAAAATGCAGTAGATGAACGAAAGGGAACTACAGTTCCTACATCTAAAAACCTGGCTCAAAGTTCTGTGTCTGAAACTTCTCCTGTGACTACCCATGAGACCACTTCTGCTACTTCTTCACAGTCAAAGCAAGATGAAGAAAAGTCTTCTGTCTCTTCGTCATCAGTTAGACCTTCCTTGGAAGAGAACATTCTTCTCGGGGTTGCCTTAGAAGGCTCAAAACGAACTCTTCCAATCGAAGAAGAAATGACTCCATCTCCTATTCCTGCGGATTCACAAGAATTTGCTGTCCAACGGAACGGTGGTGGACCTCCTGCTAGCAAGGATAAGAAGGATGGTCAGTCTTCATTTCCAACTGGTAAACAGAATGACAAGATTAGTAGCTAA 2064 0.4278 MVCPGSTQLSHDVRLSSNIGLCSFHRHKRMGVGRLHLVTINLSPCSLKQDSSALHLLSRLRAPIRHVPSKCSVFICRSVLIPGGGSGTPLMKSAGVILTRSYAALQGNPVLLQLIPALGIIAFAVCGLEPLLRLSRVLFLQRTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPIVLPSKSSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANDSSGARNVGFDFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMVLISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFSRSRAANRPFLLIEPPYKVNGDDKVKPSTRTTRANEEKDSKIDETMASETKGDEDFAATSIPLTDLNNSKDKPKLFSESQPKKENAVDERKGTTVPTSKNLAQSSVSETSPVTTHETTSATSSQSKQDEEKSSVSSSSVRPSLEENILLGVALEGSKRTLPIEEEMTPSPIPADSQEFAVQRNGGGPPASKDKKDGQSSFPTGKQNDKISS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01089 687 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Spst9g01089 687 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 674 IPR045042 -
Spst9g01089 687 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Spst9g01089 687 MobiDBLite consensus disorder prediction 671 687 - -
Spst9g01089 687 MobiDBLite consensus disorder prediction 567 619 - -
Spst9g01089 687 MobiDBLite consensus disorder prediction 497 687 - -
Spst9g01089 687 MobiDBLite consensus disorder prediction 497 527 - -
Spst9g01089 687 MobiDBLite consensus disorder prediction 547 566 - -
Spst9g01089 687 Gene3D - 192 297 - -
Spst9g01089 687 Gene3D - 298 351 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01089 Spst-Chr9 9674343 9680185 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01089 9 656 Mechanosensitive Ion Channel Family AT1G58200 56.657 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01089 K22047 - gmx:100796022 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01089 9 9674343 9680185 Spst9g01089 9 9674343 9680185 ECH