Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01084 ATGACGAGGGCGAAGATAAAGATAAAGAGAATCGACAACATAACGGCGAGGCAAGTAACATTTTCGAAGAGGAGACGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGATGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTCGATTATAGCAGTTCTAGTATGAATGATATAATAACAAAGTATAATACGCATTCGCATGGCATCAGCAAATTGGAAAGGCCATCGCTAGAACTGCAGCTAGAGGCAAGCAATAGTGCAAAAATGAGTAAGGAAATTGCAGACAGAACCCAAGAACTGAGTTGGATGAAAGGCGATGATCTCCAAGGACTAGGCTTAAATGAGTTGCAGCAACTGGAGAAAACTCTCGAAAGTGGACTCGACCGTGTGATTCAGATAAAGGAAAAGCAGATCATGGGTCAGATTTCTGAACTTCAGAAAAAGGGAATCCTATTGGAAGAAGAGAACAAGCATTTAAAGAAAAAGTTAGCGGAGACGGATATGGAGGCTATGCTGCGTAAAGCAAAAATGCCTTTTCTGGTGGACTCAAGTATGGGAATGCAAGAAGGTGTTTCCTTAGAGTCCACAAACAACGTTAGCAGTTGCATCAGTGACCCTCATGTTGAAGATGGTTCCTCGGACACATCTCTGAAGTTAGGGCTACCCTTCTCTAACTGA 699 0.4292 MTRAKIKIKRIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSSSSMNDIITKYNTHSHGISKLERPSLELQLEASNSAKMSKEIADRTQELSWMKGDDLQGLGLNELQQLEKTLESGLDRVIQIKEKQIMGQISELQKKGILLEEENKHLKKKLAETDMEAMLRKAKMPFLVDSSMGMQEGVSLESTNNVSSCISDPHVEDGSSDTSLKLGLPFSN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01084 232 Coils Coil 149 169 - -
Spst9g01084 232 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Spst9g01084 232 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Spst9g01084 232 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g01084 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst9g01084 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Spst9g01084 232 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Spst9g01084 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst9g01084 232 Coils Coil 123 143 - -
Spst9g01084 232 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g01084 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst9g01084 232 FunFam Transcription factor, MADS-box 13 83 - -
Spst9g01084 232 MobiDBLite consensus disorder prediction 211 232 - -
Spst9g01084 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst9g01084 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst9g01084 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst9g01084 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01084 Spst-Chr9 9628905 9634101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01084 1 230 MADS-box Gene Family AT2G22540 54.393 1.73e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst9g01084 K-box 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01084 - - gmx:100776749 366.696