Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01080 ATGGAATTTGACGACGACCACGAAGAGCAGGAGGAAGAAGAGGAAGAGGAAGAGGAGGAGGAAGCGGAGGAAATGGGATTCTCAGTGGCGGCGCCGAGTTACGACTCCTTGGGAAACGCGATGGCCAGGTCTAAAATGAGCAGCGCTGAGGGAGTTCCGGCCACCCTCAATTCCAGTCGCAAAGCCGGCTCCACGGGGACGGTCAGATACAGAGAATGCCAGAAGAATCATGCCGTCAGCATCGGCGGCCACGCGGTCGACGGCTGCTGCGAGTTCTTGGCCGCAGGAGAGGAAGGCACGTTGGAAGCAGTAACTTGCGCCGCCTGTAATTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGCGAAATCAGCCATTACCAACCGCGCTCGCAGCCGCAACCGCTGCACTCTCAGTATCACCACCAATTCTCTCCTTATTACTACCGTGCACCACCGCCTTCCGCTGCGGGATACCTCCACCACCACCTGGTTACCCCTCCGGTATCGCAGCATCGGCCTTTGCCGCTACCACCGCTGGCTTCGGGTGGATTGTTCAGTAGAGAGGAGGAAGACATGTCAAACCCCAGCTCGAGTGGCGGCGGAGGTGGTGGTTTTGGTGGTGGTAGCGGCAGTGGGACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTGGGGTGGAGAATTCAGAAGCACGACGAAGCTGCTGTGGAACAATTCTGCGCTGAAACCTGCGTCAAGAGACACGTGCTCAAGGTCTGGATGCACAATAATAAACACACTCTTGCTAATTCTGAGCAACGTTCAGCGGGGAATGGATCGAATCACTTGAACAGCTCCACCATAATTGCCAATTCTGAACTCTCCTGA 906 0.5563 MEFDDDHEEQEEEEEEEEEEEAEEMGFSVAAPSYDSLGNAMARSKMSSAEGVPATLNSSRKAGSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVTCAACNCHRNFHRKEIDGEISHYQPRSQPQPLHSQYHHQFSPYYYRAPPPSAAGYLHHHLVTPPVSQHRPLPLPPLASGGLFSREEEDMSNPSSSGGGGGGFGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIANSELS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01080 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 70 119 IPR006456 -
Spst9g01080 301 MobiDBLite consensus disorder prediction 170 216 - -
Spst9g01080 301 MobiDBLite consensus disorder prediction 276 301 - -
Spst9g01080 301 MobiDBLite consensus disorder prediction 1 66 - -
Spst9g01080 301 MobiDBLite consensus disorder prediction 50 66 - -
Spst9g01080 301 Coils Coil 3 25 - -
Spst9g01080 301 NCBIfam homeobox domain, ZF-HD class 215 271 IPR006455 -
Spst9g01080 301 SUPERFAMILY Homeodomain-like 202 273 IPR009057 -
Spst9g01080 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 274 - -
Spst9g01080 301 FunFam Zinc-finger homeodomain protein 2 208 276 - -
Spst9g01080 301 Pfam ZF-HD protein dimerisation region 68 120 IPR006456 -
Spst9g01080 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Spst9g01080 301 MobiDBLite consensus disorder prediction 1 25 - -
Spst9g01080 301 Gene3D - 204 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01080 Spst-Chr9 9585934 9587131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01080 68 274 ZF-HD Transcription Factor Family AT4G24660 55.924 5.21e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst9g01080 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01080 - - pvu:PHAVU_009G037900g 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01080 9 9585934 9587131 Spst9g01080 9 9585934 9587131 ECH
Spst8g01177 8 10756123 10763902 Spst9g01080 9 9585934 9587131 PCT