Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01071 ATGGCACCCAGTTTTGACTGTGTTTCGGGCCTCCTTTGCTCCGAGGACAGCACCGTTTTCGACGAGAGCCATTATGGGGGTTCGATGATGGGGGTGTACGACGATACGTGGCGTCCCCGGAGGCACCACTTTGATGAATCAGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGATGATGGTGGAAAGAGAGTGTCAACTCTGGCCTGGTGTGCCTTACTTGAATAGGCTTCAGACTGGGAATTTAGACTTCGGTGCCAGAAGGGAGGCCATTGATTGGATTCACAAGGTCCGATCGCGTTTCGGTTTTGGTCCACTCTGCGGATATCTATCTATAAATTACATGGACCGGTTCCTTTCTGCATATGAATTACCAAAGGGAAGAGTTTGGACAATGCAATTGTTGGCTGTGGCCTGTTTATCTCTGGCAGCCAAAGTAGATGAGACAGAAGTTCCAGTGTGTCTTGATTTACAGGTGGGTGAATCAAAGTTTATATTTGAGGCTAAAACTATAAAGAGAATGGAGCTTTTAGTACTGAGCACATTGAAGTGGAGAATGCAAGCAATCACTCCTTTCACCTTCCTTGATTACTTCCTTTGCAAGATCAATGGTGATCAAAGTCCATTAAAGTCTTTAGTCATGCGATCTATCCAACTGATATCAAACACTGCAAGAGGAATTGAGTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCCATGAATGTCATGGGGGAAACCCAACCTGTTGACACAGAGAAAGCAATTTCTGTTCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGCATTAAAATGATCCAAGAGTTGTCATCCGACAGTGGCTCTGTCAAGGATTCAAGTGCTTCTGTCTCTTGCCTACCCCAAAGCCCAATAGGTGTGTTAGATGCTTTGTGCTTCAGCCACAAAAGTGATGACACAAATGCTGGTTCATGTGCTAATTCTTCACACAATACTCCTGATGCTAAAAGGAGGAAGCTAAATAAAACCTGTGGAGCAGAGCTATTGGAGGGATGTGGATTGGTTTCTTTGCTCGTGGGCTTTTCTTTCGTCCGTGGGCTTTTCAAACAGACGCACTTAGTTGATATCCGTTTGTTAGAAGAAGATGACAAAACGGATCAAATCCACAACCAAATTGGCTCCATGGTCTCATGTCCCACTCTACCCCACAATACTCAAATGCATCATCTTAATGGGACCCTGGAGTATACAGTCACTGATAACTTTGCCACTGTAAAAGTAAAACAAAATAAAAAACTTACAAAGAAGAAGAGTGAGGGCAGGATTTTAGAAATAGAAAGTCAATACGTGCGTTTGATGCAGAGAAAGGCATATATGTCAATGCATGCTCTATATAATTCAACTCCCGTGCTGTCTTGTGGGTTGGAGTTTCCACATCCACTTTCCACTTTGACTGGTTGGGAAGTAGTTATGGTGTGCCAAGCAGCTAGTCAAACGAGATTTCGGGCATTGAAACATGAAAATGGAATTGCCGGGAACTCCACCATTATTGTTAGAGTTATAGCATGTTTTCAACCTCTCAGGGAATGCCAGGCTGAATATTTCCGTCATTTGCTCAAACCTGTCACGTAA 1626 0.4379 MAPSFDCVSGLLCSEDSTVFDESHYGGSMMGVYDDTWRPRRHHFDESDELPLLSDECLAMMVERECQLWPGVPYLNRLQTGNLDFGARREAIDWIHKVRSRFGFGPLCGYLSINYMDRFLSAYELPKGRVWTMQLLAVACLSLAAKVDETEVPVCLDLQVGESKFIFEAKTIKRMELLVLSTLKWRMQAITPFTFLDYFLCKINGDQSPLKSLVMRSIQLISNTARGIEFLEFKPSEIAAAVAMNVMGETQPVDTEKAISVLIQHVEKERLLKCIKMIQELSSDSGSVKDSSASVSCLPQSPIGVLDALCFSHKSDDTNAGSCANSSHNTPDAKRRKLNKTCGAELLEGCGLVSLLVGFSFVRGLFKQTHLVDIRLLEEDDKTDQIHNQIGSMVSCPTLPHNTQMHHLNGTLEYTVTDNFATVKVKQNKKLTKKKSEGRILEIESQYVRLMQRKAYMSMHALYNSTPVLSCGLEFPHPLSTLTGWEVVMVCQAASQTRFRALKHENGIAGNSTIIVRVIACFQPLRECQAEYFRHLLKPVT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01071 541 Gene3D - 59 277 - -
Spst9g01071 541 FunFam D2/4-type cyclin 71 184 - -
Spst9g01071 541 SMART Cyclin_C_2 190 301 IPR004367 -
Spst9g01071 541 PANTHER CYCLINS 55 282 IPR039361 -
Spst9g01071 541 CDD CYCLIN_AtCycD-like_rpt2 190 278 - -
Spst9g01071 541 Pfam Cyclin, C-terminal domain 190 288 IPR004367 -
Spst9g01071 541 CDD CYCLIN_AtCycD-like_rpt1 87 185 - -
Spst9g01071 541 FunFam D6-type cyclin 185 276 - -
Spst9g01071 541 SUPERFAMILY Cyclin-like 50 187 IPR036915 -
Spst9g01071 541 Gene3D - 71 188 - -
Spst9g01071 541 SUPERFAMILY Cyclin-like 173 281 IPR036915 -
Spst9g01071 541 SMART cyclin_7 93 181 IPR013763 -
Spst9g01071 541 Pfam Cyclin, N-terminal domain 57 187 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01071 Spst-Chr9 9496883 9511853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01071 25 323 Core Cell Cycle Gene Families AT2G22490 44.304 3.30e-83 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01071 K18810 - gmx:547739 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01071 9 9496883 9511853 Spst9g01071 9 9496883 9511853 ECH
Spst8g01163 8 10335458 10335753 Spst9g01071 9 9496883 9511853 PCT