Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01052 ATGGATCCTGCACCTTCCTTCACTCTCTCCCTCCTCCTCTTCCTCGCTCTCATGCTATTACATACATATGCAGCACACTGCAGAGAAACTCCACCTCCAACTCCCCATGGAATCATTGCTCCACCGCCGCCCGACAACGACAACGACACCACGCCGTCGTTCAGACCGGGCATAGCCGTCGTCGTCTGCGTTTTGACCACCATAATCTCCCTCACGTCGCTCCTCCTCCTCTACATCAAACACTGCAACGGCGGGAGCATCCACGGCGGCGGCGGAGGGAGCTCGATTCCGTGGACGGTGGCGCCTTTCGCCGGAAGGAAGAACTCCGGCATTGACCGGACCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGAGGACAAAAGGAGGGACTGGACTGCGCAGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACATGGCTGGACGCGCATTCAACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGCCGTTCCGCCAAACTCAACAACGGAACAACAACAGCAGCAGCAACAACGAGGAACGCGCGCGTTTGAATTTGGACGTGGAGAAGCAGGAGATCGCGGAGTCTGGACGGAGGAGGCATTCGTCAGTGGGGGAGAGGGGAACGGAGGAGCAGAGTAGGAAGTGGACGACGTCGTTTCGAAGGTCGTTGGATAGCGCGACACCAAGAAAAAAGAGCGAGAGCGGCGGTGTTGTTGGTATTGGTTGGATTGTGCGCGCGAGAAAAGACGGAATGTTGTTGACGCAAGAGACGGAGAGAGAGGGTGATAGGACAAGCGTTGAACGGAGGCTGGAACACCGGATCATTGTCTCCCCGGGCCCAGGCCCAGGCCCAGGAAAAATGTATGGGGTCCAGCAGCGGTGGAGCGACGTGCAAGCCTCGGACCTGCTGTATCTGACGTCGGAGATGATCCTGAGCGAGGCCCAATGGAACACGCGCCGCGGAGGAAGGCGAAGGGGGACGCGCCGTACCAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCGAGCATTACCAATAATAATACCGAGGAGGACAGATACAGAGACAGAGACACAGAGTGGGAACAACAACGACAGGGAGAAAGAGAAGAGGGTCTTGTGAGAAGGTGGTTGGGTTGGATTTCAAAATCACGCACACAAACGCAGCCACAAACCCAACCAGCTGTACGGTAG 1344 0.5699 MDPAPSFTLSLLLFLALMLLHTYAAHCRETPPPTPHGIIAPPPPDNDNDTTPSFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGSIHGGGGGSSIPWTVAPFAGRKNSGIDRTVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKPFRQTQQRNNNSSSNNEERARLNLDVEKQEIAESGRRRHSSVGERGTEEQSRKWTTSFRRSLDSATPRKKSESGGVVGIGWIVRARKDGMLLTQETEREGDRTSVERRLEHRIIVSPGPGPGPGKMYGVQQRWSDVQASDLLYLTSEMILSEAQWNTRRGGRRRGTRRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSITNNNTEEDRYRDRDTEWEQQRQGEREEGLVRRWLGWISKSRTQTQPQTQPAVR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01052 447 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 431 - -
Spst9g01052 447 MobiDBLite consensus disorder prediction 195 212 - -
Spst9g01052 447 MobiDBLite consensus disorder prediction 399 420 - -
Spst9g01052 447 SMART ring_2 136 177 IPR001841 -
Spst9g01052 447 SUPERFAMILY RING/U-box 130 183 - -
Spst9g01052 447 Pfam Ring finger domain 135 178 IPR001841 -
Spst9g01052 447 FunFam RING-H2 finger protein ATL43 111 185 - -
Spst9g01052 447 Coils Coil 445 447 - -
Spst9g01052 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 185 IPR013083 -
Spst9g01052 447 MobiDBLite consensus disorder prediction 192 267 - -
Spst9g01052 447 MobiDBLite consensus disorder prediction 213 249 - -
Spst9g01052 447 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Spst9g01052 447 MobiDBLite consensus disorder prediction 349 370 - -
Spst9g01052 447 CDD RING-H2_EL5-like 135 178 - -
Spst9g01052 447 MobiDBLite consensus disorder prediction 34 49 - -
Spst9g01052 447 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01052 Spst-Chr9 9390470 9391813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01052 48 430 C3H Transcription Factor Family AT5G05810 43.951 1.41e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01052 K19041 - gmx:100794083 414.846