Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst9g01052 | ATGGATCCTGCACCTTCCTTCACTCTCTCCCTCCTCCTCTTCCTCGCTCTCATGCTATTACATACATATGCAGCACACTGCAGAGAAACTCCACCTCCAACTCCCCATGGAATCATTGCTCCACCGCCGCCCGACAACGACAACGACACCACGCCGTCGTTCAGACCGGGCATAGCCGTCGTCGTCTGCGTTTTGACCACCATAATCTCCCTCACGTCGCTCCTCCTCCTCTACATCAAACACTGCAACGGCGGGAGCATCCACGGCGGCGGCGGAGGGAGCTCGATTCCGTGGACGGTGGCGCCTTTCGCCGGAAGGAAGAACTCCGGCATTGACCGGACCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGAGGACAAAAGGAGGGACTGGACTGCGCAGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACATGGCTGGACGCGCATTCAACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGCCGTTCCGCCAAACTCAACAACGGAACAACAACAGCAGCAGCAACAACGAGGAACGCGCGCGTTTGAATTTGGACGTGGAGAAGCAGGAGATCGCGGAGTCTGGACGGAGGAGGCATTCGTCAGTGGGGGAGAGGGGAACGGAGGAGCAGAGTAGGAAGTGGACGACGTCGTTTCGAAGGTCGTTGGATAGCGCGACACCAAGAAAAAAGAGCGAGAGCGGCGGTGTTGTTGGTATTGGTTGGATTGTGCGCGCGAGAAAAGACGGAATGTTGTTGACGCAAGAGACGGAGAGAGAGGGTGATAGGACAAGCGTTGAACGGAGGCTGGAACACCGGATCATTGTCTCCCCGGGCCCAGGCCCAGGCCCAGGAAAAATGTATGGGGTCCAGCAGCGGTGGAGCGACGTGCAAGCCTCGGACCTGCTGTATCTGACGTCGGAGATGATCCTGAGCGAGGCCCAATGGAACACGCGCCGCGGAGGAAGGCGAAGGGGGACGCGCCGTACCAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCGAGCATTACCAATAATAATACCGAGGAGGACAGATACAGAGACAGAGACACAGAGTGGGAACAACAACGACAGGGAGAAAGAGAAGAGGGTCTTGTGAGAAGGTGGTTGGGTTGGATTTCAAAATCACGCACACAAACGCAGCCACAAACCCAACCAGCTGTACGGTAG | 1344 | 0.5699 | MDPAPSFTLSLLLFLALMLLHTYAAHCRETPPPTPHGIIAPPPPDNDNDTTPSFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGSIHGGGGGSSIPWTVAPFAGRKNSGIDRTVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKPFRQTQQRNNNSSSNNEERARLNLDVEKQEIAESGRRRHSSVGERGTEEQSRKWTTSFRRSLDSATPRKKSESGGVVGIGWIVRARKDGMLLTQETEREGDRTSVERRLEHRIIVSPGPGPGPGKMYGVQQRWSDVQASDLLYLTSEMILSEAQWNTRRGGRRRGTRRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSITNNNTEEDRYRDRDTEWEQQRQGEREEGLVRRWLGWISKSRTQTQPQTQPAVR | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst9g01052 | 447 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 44 | 431 | - | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 195 | 212 | - | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 399 | 420 | - | - | |
Spst9g01052 | 447 | SMART | ring_2 | 136 | 177 | IPR001841 | - | |
Spst9g01052 | 447 | SUPERFAMILY | RING/U-box | 130 | 183 | - | - | |
Spst9g01052 | 447 | Pfam | Ring finger domain | 135 | 178 | IPR001841 | - | |
Spst9g01052 | 447 | FunFam | RING-H2 finger protein ATL43 | 111 | 185 | - | - | |
Spst9g01052 | 447 | Coils | Coil | 445 | 447 | - | - | |
Spst9g01052 | 447 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 185 | IPR013083 | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 192 | 267 | - | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 213 | 249 | - | - | |
Spst9g01052 | 447 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 178 | IPR001841 | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 349 | 370 | - | - | |
Spst9g01052 | 447 | CDD | RING-H2_EL5-like | 135 | 178 | - | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 34 | 49 | - | - | |
Spst9g01052 | 447 | MobiDBLite | consensus disorder prediction | 32 | 51 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst9g01052 | Spst-Chr9 | 9390470 | 9391813 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst9g01052 | 48 | 430 | C3H Transcription Factor Family | AT5G05810 | 43.951 | 1.41e-82 | 258 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst9g01052 | K19041 | - | gmx:100794083 | 414.846 |