Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01051 ATGGCGATGGCTGATAATAGACAAAGAGACATGCCTCTTCCAGATGACCGATTGCCACCTAAGGGCAAAGCCCTTGCCTACCCAGAAGCAGTTCAACTTGTCAATCCCATCGAACCAGAAATTAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGCAGTAGGATTCTGGCTAATTACGCCGAGCGATGAGTTTCGATCTGGTGGGCCTCTCAAACAAAACTTAACTTCCCATGTGGGCCCCACCACGCTTGCCGTGTTTCTGAGTGCTCATTATAGTGGAGAGGATTTGGTGCCTAAGTTCAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTTCCTATGATGGAGGTGACCCCCTTAAGCTATGGGAAGATGCTAAACTACAGATGTTGGTGGAAGCTCAAAGCTGGCCTTACAGTTTCCCTGAATCAGAAGATTTTCCCAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGATTATATCTCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGGGATGTAGGGTCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCAGCATCACCAATATACGTGCAGGAGACTACAATGTTTATGCTTGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACATAACAGAAGGTTGTGATATCGACCTTGGTGATCTTGTGTGTGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCCGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCTGACAAGTTCAGGCAATATGGGTTATGGGAGAGATATGCAGAACTCTACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGAAAGAAAGATGACAACACATTTCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGATAAAGTGAACAAAACCAGCAGCTATAAACTGAGGGTGGCTTTGGCATCGGCAACATTATCCGAACTTCAGGTTCGAGTTAATAATCCAAAGGGTCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGTAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAGTGTAGACATACCCGGAACTCAATTTGTTGAAGGAGAAAATACCATATTTTTGTCACAAACCAGAGGCAATGGTCCATTTCAGGCAATTATGTATGATTATATTCGTTTGGAAGCTCCACCATCATCTACCTTCAATAAGACAAGAGTTATGCAGATCTCAAAGCCTAAGGAAAATATGATGATGGACTTCACTAATCATTTCCTGTTCTTTATGCTGCAAGTCTTCGTGGTTCTGGGTGGTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGAATTGTCACGGGAATTCAATATAATGGCATAGACAATTTGCTCGAAGTTCTCAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACGAAGGTGGAGAAAACAGAACCCAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACGAATTTAACGGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCGTTCACCAGAACATGGAATGCCTCTTTTCAGGGGAAGCTTCCGCCACTGAATATTGACAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGGTTCTACACCTATGCCATTTACGATCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAACCTAGAAAAGACAAGTTCCATTACATGGCAATAGCGGACAACAGGCAAAGATTTATGCCTCTGCCTGATGACCGGTTGCCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAAGCTGTTCGTCTTGTTGAGCCCGTCGAGCCTGAATTCAAAGGAGAGGTTGATGATAAATATGAGTATTCGTGCGAGAGTCGATACAATCGTGTTCACGGTTGGATGAACATTGATCCACTGAATTCCACTGGATTCTGGCTTATTACGCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGGTGGATCTGATCATGAAATTTGGGCCCAATGAGCCCTGGAAGAAAGTCTATGGGCCCATATTCATATACCTTAATTCTCTATCTAACGGGTTTAGCCCAATCAAGCTCTGGGAGGACGCCAAACAACAGATGGTGAATGAAGTTGAGAGCTGGCCCTATACATTTCCTGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGATACGTCAGTGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCTATAGGGGATGTTGGTTCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCCATTATTAACGTACGCCCCGGGGACTATAATCTCTACTCCTGGGTCACTGGGTACATTGGTGATTACCAATTCGATAAAGTCATCAACGTAACTTCAGGTTGTGAAATTAATGTGCATGAGATTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCCTGTACATTAACAGACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTCGCTCAGGTTAATAGGAAGAAAGACAATGGCACATACCAAGGAACCTCATGGCAAATTAACTTCAACCTTGATAGTGTTAATACCAATGGATCCTACACATTGCGAGTGGCTCTGGCAACTGTGCATTCTGCTGAATTACAGATTCGGATAAACAAATTAGAAGCAGATCCACCTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATACAATAGCTAGACATGGGATTCACGGTCTCTACTGGCTATACAGCATTGATGTACACGGCACTCTTCTTGTGCAGGGAAACAATACCATTTTTCTAACGCAAACAATGAACCATAGTCCTTTCATAGGAATTATGTACGACTATATTCGTTTAGAACACAAAAGTTGA 3483 0.4298 MAMADNRQRDMPLPDDRLPPKGKALAYPEAVQLVNPIEPEIKGEVDDKYQYSCDNKDNKVHGWICMDPAVGFWLITPSDEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLKLWEDAKLQMLVEAQSWPYSFPESEDFPKWDERGNVSGRLLVRERYINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSITNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCDIDLGDLVCEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDKVNKTSSYKLRVALASATLSELQVRVNNPKGPRPLFSSGLIGRDNSIARHGIHGLYWLYSVDIPGTQFVEGENTIFLSQTRGNGPFQAIMYDYIRLEAPPSSTFNKTRVMQISKPKENMMMDFTNHFLFFMLQVFVVLGGDTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDEGGENRTQKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRTWNASFQGKLPPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRIAFKPRKDKFHYMAIADNRQRFMPLPDDRLPPRGQVLAYPEAVRLVEPVEPEFKGEVDDKYEYSCESRYNRVHGWMNIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGVDLIMKFGPNEPWKKVYGPIFIYLNSLSNGFSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEERGKVQGRLLVRDRYVSDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYQFDKVINVTSGCEINVHEIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYINRLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNGTYQGTSWQINFNLDSVNTNGSYTLRVALATVHSAELQIRINKLEADPPLFSSGVIGKENTIARHGIHGLYWLYSIDVHGTLLVQGNNTIFLTQTMNHSPFIGIMYDYIRLEHKS 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01051 1160 Gene3D - 28 145 IPR014718 GO:0030246
Spst9g01051 1160 CDD RGL4_M 859 958 IPR029413 -
Spst9g01051 1160 CDD RGL4_N 15 146 - -
Spst9g01051 1160 CDD RGL4_C 287 474 - -
Spst9g01051 1160 CDD RGL4_M 176 275 IPR029413 -
Spst9g01051 1160 CDD RGL4_C 970 1157 - -
Spst9g01051 1160 SUPERFAMILY Starch-binding domain-like 859 955 IPR013784 GO:0030246
Spst9g01051 1160 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 477 - -
Spst9g01051 1160 SUPERFAMILY Galactose-binding domain-like 965 1157 IPR008979 -
Spst9g01051 1160 Gene3D - 966 1157 - -
Spst9g01051 1160 Gene3D - 283 474 - -
Spst9g01051 1160 FunFam Rhamnogalacturonate lyase B 856 955 - -
Spst9g01051 1160 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g01051 1160 Pfam Polysaccharide lyase family 4, domain II 882 954 IPR029413 -
Spst9g01051 1160 Pfam Polysaccharide lyase family 4, domain II 199 271 IPR029413 -
Spst9g01051 1160 SUPERFAMILY Galactose-binding domain-like 282 474 IPR008979 -
Spst9g01051 1160 FunFam Rhamnogalacturonate lyase B 173 272 - -
Spst9g01051 1160 CDD RGL4_N 528 819 - -
Spst9g01051 1160 Gene3D - 175 267 - -
Spst9g01051 1160 Gene3D - 856 956 - -
Spst9g01051 1160 Pfam Polysaccharide lyase family 4, domain III 285 473 IPR029411 -
Spst9g01051 1160 Pfam Polysaccharide lyase family 4, domain III 968 1156 IPR029411 -
Spst9g01051 1160 SUPERFAMILY Starch-binding domain-like 219 264 IPR013784 GO:0030246
Spst9g01051 1160 Pfam Rhamnogalacturonate lyase family 524 726 IPR010325 -
Spst9g01051 1160 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01051 Spst-Chr9 9379246 9388636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01051 1 476 Polysaccharide Lyase AT1G09890 71.967 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01051 K18195 - gmx:100786488 1240.71