Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01049 ATGTCCGGCCCAGGGGTGCGGTTGCACATTCAAGATCACCATGTGGTGATGGATAATGGCATAGCCCAGGTTACGTTATCAAATCCAGGTGGGATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTCGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAGGGGATTTTTGATGTGTTTCAATACATGGCTATGGCAGACAATAGACGAAGGATTCTTCCTTATCCGGAAGATCGGTTACCTGGAAGATGTCAAACCTTGGGCTATGCAGAAGCTGTCCTACTAAACAATCCGAAAGACCCACGATTACAAGGAGAGGTATCTGTTGCAAATGTGGATGACAAGTATCAGTATTCATGTGCAAACATCGATAATCAGGTCCATGGGTGGATATCTTTCAGTCCACCAGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCGCTCAAACAGAATTTGACATCACACGTAGGCCCCACCACACTTGCAATGTTTCTTAGTAGTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTTTATATTTATCTCAATTCTGCAGCAGTCGGTGACGATCCACTTTGGCTGTGGGAGGATGCAAAAATACAGACGATGAATGAAGTTCAAAGTTGGCCATATTATTTCCCAGCATCGGAGGATTTTCTAAAATCAGATCAACGGGGCAATGTCAGTGGCAGATTACTTGTCTTAGACAAGTACGTCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTTAATGAAGATAACACCAGGTTGTTACAATGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCCGCAGAATTTTATGCTCCAGATCCCAATCCAAAATATATTAATAGGCTTTTTATCAACCACCCAGACAGGTTCAGGCAGTATGGATTGTGGGAGAGGTATACCGAATTGTATCCTGATGCAGATTTGGTTTACACGATTGGTGTTAGTGACTATTCGAAAGATTGGTTTTATACGCAGGCTCCGAGGAAAAAAGAGGATAACACTCTCCAAGGGACAACTTGGCAAATCAAGTTCGAAGTCAGAAGCGTGGTTCATGGAAGTAAATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATAATCCCGATGCTCGACGACCCCTATTTACCAGTGGATTAATCGGAAGGGACAACTCAATAGCAAGACACGGAATTCACGGAATCTATTGGCTTTACCATGTGGATATACCAGGTTCTCTCCTTATTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAAGGTATCATGTATGATTATATTCGTATGGAAGGTCCACCTTGTGAGGGAGTTTAA 1686 0.4342 MSGPGVRLHIQDHHVVMDNGIAQVTLSNPGGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVFQYMAMADNRRRILPYPEDRLPGRCQTLGYAEAVLLNNPKDPRLQGEVSVANVDDKYQYSCANIDNQVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAAVGDDPLWLWEDAKIQTMNEVQSWPYYFPASEDFLKSDQRGNVSGRLLVLDKYVCTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDLMKITPGCYNELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPKYINRLFINHPDRFRQYGLWERYTELYPDADLVYTIGVSDYSKDWFYTQAPRKKEDNTLQGTTWQIKFEVRSVVHGSKYKLRVAIASATLAELQIRVNNPDARRPLFTSGLIGRDNSIARHGIHGIYWLYHVDIPGSLLIDGTNTIYFTQPRCTSPFQGIMYDYIRMEGPPCEGV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01049 561 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 71 557 - -
Spst9g01049 561 CDD RGL4_M 256 355 IPR029413 -
Spst9g01049 561 Pfam Polysaccharide lyase family 4, domain II 279 349 IPR029413 -
Spst9g01049 561 CDD RGL4_C 367 554 - -
Spst9g01049 561 Pfam Polysaccharide lyase family 4, domain III 365 553 IPR029411 -
Spst9g01049 561 SUPERFAMILY Galactose-binding domain-like 362 554 IPR008979 -
Spst9g01049 561 SUPERFAMILY Starch-binding domain-like 255 333 IPR013784 GO:0030246
Spst9g01049 561 FunFam Rhamnogalacturonate lyase B 253 351 - -
Spst9g01049 561 SUPERFAMILY Galactose mutarotase-like 14 219 IPR011013 GO:0003824|GO:0005975|GO:0030246
Spst9g01049 561 Gene3D - 363 554 - -
Spst9g01049 561 Gene3D - 119 227 IPR014718 GO:0030246
Spst9g01049 561 CDD RGL4_N 6 217 - -
Spst9g01049 561 Pfam Rhamnogalacturonate lyase family 9 72 IPR010325 -
Spst9g01049 561 Gene3D - 253 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01049 Spst-Chr9 9369730 9375045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01049 71 557 Polysaccharide Lyase AT1G09910 67.351 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01049 K18195 - gmx:100814185 932.939