Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01038 ATGGAGCTCTATGACCAGGATTTCTTGGAGGAATTGATGACTCTAAGAAGAGAAACATGGGACACCAATCCAAGCACAGAAGAACACCAGTTCTTCTGTAATGGCTGGAGCAGTTTTGACTGTTTTGATCAAAACTCTCTACCTTACCTCCCAAACTCTTCTTGTGGTCAAGAAGTTCCTCAAAGCTACAACGACTACCCCTTCAATGAAATGTATGGCTCTTTACTCGATGAATCCTCACCTCAGATTATCGATTCATACTATAATACCCTTGATACTCCACTCAATACCCTTGGTCACGAGGATCATCCATTGTCCATTATGGAAGAAGACGACCCCGGTATGCTTGGGGAAGAGCTCAAGAACTTGGAGCTGCAAACAACATGCAAAGTAGAGCCAACTCAATCCTCTGAAATGCCAGTTTTCAACATGGGAACGGGTCTGGAAAGAAAGAATCGGTCAAAGAAGCTTCAGGGGCAACCATCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGATTAAATGATAGGCTCTCAATGCTGAGAGCAATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTTCAGCAAGAAGTAGAAGTAGATTCAAAAATGGCAGGCATTTTCAAAGATGTAAAGCCAAATGAAATCCAAGTTAGAAATTCACCCAAGTTTGAAGTGGAGAGGAGTGTGGACACACGGGTGGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTACTATCAACAGTAAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATCAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAACAAAGGGCAATGCTGAGTTCTGAGGATATAAAACAAGCATTGTATAGAAGCGCAGGATATGGAGGAAGGTGTTTAGAACTCAGATTAGAGTTGCCATTGGTATATAATCCAAGAGAATCTTTCAGATATGACCAATGCCCTGGCGGCACTGCTTTTAAGAAAGCTCAAATGTGA 1080 0.4185 MELYDQDFLEELMTLRRETWDTNPSTEEHQFFCNGWSSFDCFDQNSLPYLPNSSCGQEVPQSYNDYPFNEMYGSLLDESSPQIIDSYYNTLDTPLNTLGHEDHPLSIMEEDDPGMLGEELKNLELQTTCKVEPTQSSEMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEVDSKMAGIFKDVKPNEIQVRNSPKFEVERSVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQRAMLSSEDIKQALYRSAGYGGRCLELRLELPLVYNPRESFRYDQCPGGTAFKKAQM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01038 359 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 65 321 - -
Spst9g01038 359 Gene3D - 149 223 IPR036638 GO:0046983
Spst9g01038 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Spst9g01038 359 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Spst9g01038 359 MobiDBLite consensus disorder prediction 150 171 - -
Spst9g01038 359 Coils Coil 198 225 - -
Spst9g01038 359 CDD ACT_UUR-ACR-like 253 294 - -
Spst9g01038 359 SMART finulus 165 214 IPR011598 GO:0046983
Spst9g01038 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01038 Spst-Chr9 9283303 9286253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01038 150 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.582 1.21e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g01038 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01038 - - gmx:100812578 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01038 9 9283303 9286253 Spst9g01038 9 9283303 9286253 ECH