Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01036 ATGTCTCCACCATTGCTGGGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACCTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTCAAAAGCTTAGAATTAAAAGAACGCAACTACATGGGATTATCTGATTGTTCTTCTGTGGACAGCTCAGTTCCGTCCTTCTCAGAAGAGAGTAAAAGTAATCTGAACCTGAAAGCCACTGAGCTTAGGCTGGGGCTTCCGGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCTTTGTTTCCTTTGCGTCCTTTGACTGATGATCACCATTCTTCGACCAAGACTGCTGTTTTGGGAAACAAAAGAGGGTTTTCAGATGCCATGAATGAATTCTCAGAGGGGAAGTTCCTAGTTGATTCTGAGGCCAATCCCTTACTATCACCCAGGCCTGCTTCTAACTTGGGATTAAATCCTGGTTCTACACTTGAGAAGGTTGGGGCTCAGCAAACCAAAATGAAAGAAGTAGCAACAACAAAGGTGGGGCTCGATAGGCCTCATTCTGCCAATGAAACTAGACCAAGTATTGATTGCTCTGCAAATAGTAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGGAAAAGTCGGGGTTGGTGCAATGTTCGTCAAAGTAAGTATGGATGGGGCTCCTTATTTAAGGAAAGTAGACTTGAATAATTACTCTACATATCCAGAATTGTCTTCTGCTCTAGAGAAGATGTTCAGCTGTTTCACCATAAGTCAATGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGATCTCCTTCATGGATCAGAATACGTTCTTACATATGAAGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATCGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAATTTTGTCAAGACATATTGGATATGGTTGTCGGGGAGGGGTGGGGGTGTAGAAGCCAAGCATGTGAATCTCTGA 1158 0.4387 MSPPLLGIGEEEGKSNVTLLVSSSTTMESVCLKSLELKERNYMGLSDCSSVDSSVPSFSEESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAVLGNKRGFSDAMNEFSEGKFLVDSEANPLLSPRPASNLGLNPGSTLEKVGAQQTKMKEVATTKVGLDRPHSANETRPSIDCSANSNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDGKVGVGAMFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKNFVKTYWIWLSGRGGGVEAKHVNL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01036 385 MobiDBLite consensus disorder prediction 184 205 - -
Spst9g01036 385 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Spst9g01036 385 FunFam Auxin-responsive protein 241 358 - -
Spst9g01036 385 Gene3D - 241 360 - -
Spst9g01036 385 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 353 IPR003311 GO:0005634|GO:0006355
Spst9g01036 385 Pfam AUX/IAA family 71 357 IPR033389 -
Spst9g01036 385 SUPERFAMILY CAD & PB1 domains 245 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01036 Spst-Chr9 9251282 9255657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01036 249 351 B3 DNA Binding Superfamily AT2G46530 33.981 5.29e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst9g01036 AUX_IAA 6e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01036 K14484 - gmx:100783314 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01036 9 9251282 9255657 Spst9g01036 9 9251282 9255657 ECH