Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01034 ATGGGTACTGGTTGGAGGAGAGCCTTCTGCACCCGCGACCCTGCTTCTACCATATCGGATAAACAACCAGGAAGTCCAAGCCCAAGCCCCAGCCCAAGAAGCTGTGCCCGTTTGGGTTTTCTCTCTGGAGGAAGCAACCCTTCCACCCCACGCTTGCGTTGCACAACAATACCGGAATCTGCATCTCAATCAGTTACTGTAAACGACAGCCCCAGAGTTCAAAGCAAGAACACCCCCAGAGCAACCAAGTCTCCGAAAACGCTCTCTGTCTCAAATCCAACTTCACCGCGTTCTCCTCTCAAACTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATTTACACTGCGGAATGCGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTACGCAAACACGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAAGACGTGCCTCTACTCGCGGCGCACAAGAACCTCGCTGCACAATCCGCCTCGCAAAACCAAGTCGCGTACAGAACCACCGAAAACCCCAATGCCAGCGACAAAAAGCCAACAGAAAACACATCCCCCGTTTTCAAAACCTACAACCACGTCGAGCCACCACCCAAGCATTCCGATTCACTCCGGTCCTACGACGACGACGAGCCACTCTTCTCTCCCACCTGCACCTCCGGCGGAAGGATCATTCCCATACCTGAAGCCGACGAGAATGCCGAAGACGACGACGACGAAGAAGACGCCGGCGAGTTCCAAGGCTTTTTCGTCAATCCGAAGAATTCGTCCTCCTCAAAATCGTACTCCGATTCGTTCCAAACAAATGAAGGTGATTCCAGAACAGTTCAGGTGAAACTCATGCCAGAGTGTGCTGTTATCTCAGCTTCCCGAACGCACGAGACCTACGCTTTGGTGTTGAAAGTGAAGGCTCCACCGCCGCCATCTCCACCACGGAACAGCGCGGCGCCATCGCAACGCGCGCCGATAGATCTCGTCACCGTGCTGGACGTCGGGGGGAGCATGACCGGCGCCAAGCTGCATATGCTAAAGCGCGCGATGCGTTTGGTTATCTCATCGCTTGGCCCCGCTGACAGGCTCTCCATCGTGGCTTTCTCCGCCACCTCCAAACGACTCTTACCTCTGCGCAGAATGACTGGGCAGGGTCAGCGCGTGGCTCGGCGCATCGTTGACCGACTCATTGCAGGTCAAGGCTCGAGCGTAGGCGACGCGTTGAGGAAAGCAACGAGAGTGTTAGAGGATCGCAGGGAGAGAAACCCGGTGGCGAGCGTGATGTTGTTATCAGACGGTCAAGAAGAGAGGGTTCAAAATCAGAGGGGTAATAATAATAATAATAATAGTAATCAGAGGAAGTCGTCGAGCCACGTGTCGTCGACGCGGTTCGCTCATATCGAGATTCCGGTTCACGCTTTCGGGTTCGGGGCGAAAAGCGGTTACAGCCAGGAACCGGGGGAGGACGCGTTCGCGAAGTGCGTTGGTGGGCTGCTGAGCGTGGTGGTGCAGGACTTGAGGATTCAAGTGGGGTTTGAGTCAGAGGCGGTTGAGATCAGCGCGATTTACTCGTGCAGTGGAAGGCCCAGTCTGCTGAGCTCAGGGGCGGTGCGGCTCGGTGACTTGTACGCCGAGGAAGAGAGGGAGCTGTTGGTAGAGTTGAGAGTTCCGGCGTCGTCAGGAGCGGGGACCCACCACGTGATGGCCGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATCGTATACGGTAGGGAACAGGGACTTCTGGTGCCGCCGCCTCAGAGCGTTCGTTGTTCCGGTTGTAGAATCCAGCGCCTCAGGAATCTCTTCATAACCACCCGAGCCATTGCAGAGTCCAGGAGGCTTGTTGAGCATAATGCTGACTTCACCAGCGCGCATCATTTGCTTGCATCCGCGCGTGCACTTCTCATGCAGTCTAACGCTGCTTCGGTTGAAGAGTACGTGCGCGGCTTGGAGGCTGAGCTGGCAGAGCTTCATTGGCGGAGACAGCATGAGCAGGTCCAGCTTCAGCAGCAGCAGCAAATTATGCAACAGCGGAGAAGAGGGAGTGAGAGAGAGGTGACTTTGGTGGACGAGAATGGCGAGCCGCTTACTCCCACGTCGGCTTGGAGAGCTGCTGAGAAGCTGGCTAAGATGGCAATGATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2280 0.5553 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTIPESASQSVTVNDSPRVQSKNTPRATKSPKTLSVSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAQSASQNQVAYRTTENPNASDKKPTENTSPVFKTYNHVEPPPKHSDSLRSYDDDEPLFSPTCTSGGRIIPIPEADENAEDDDDEEDAGEFQGFFVNPKNSSSSKSYSDSFQTNEGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPSPPRNSAAPSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSATSKRLLPLRRMTGQGQRVARRIVDRLIAGQGSSVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNNNNNNSNQRKSSSHVSSTRFAHIEIPVHAFGFGAKSGYSQEPGEDAFAKCVGGLLSVVVQDLRIQVGFESEAVEISAIYSCSGRPSLLSSGAVRLGDLYAEEERELLVELRVPASSGAGTHHVMAVRCLYKDPASQEIVYGREQGLLVPPPQSVRCSGCRIQRLRNLFITTRAIAESRRLVEHNADFTSAHHLLASARALLMQSNAASVEEYVRGLEAELAELHWRRQHEQVQLQQQQQIMQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01034 759 ProSiteProfiles Zinc finger RING-type profile. 115 160 IPR001841 -
Spst9g01034 759 SUPERFAMILY RING/U-box 109 165 - -
Spst9g01034 759 CDD vWA_C3HC4_type 343 520 - -
Spst9g01034 759 Gene3D von Willebrand factor, type A domain 344 514 IPR036465 -
Spst9g01034 759 MobiDBLite consensus disorder prediction 270 294 - -
Spst9g01034 759 SMART ring_2 115 159 IPR001841 -
Spst9g01034 759 SMART VWA_4 342 535 IPR002035 -
Spst9g01034 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 226 IPR013083 -
Spst9g01034 759 Pfam von Willebrand factor type A domain 345 451 IPR002035 -
Spst9g01034 759 CDD RING-H2_WAVH2 112 165 - -
Spst9g01034 759 SUPERFAMILY vWA-like 342 523 IPR036465 -
Spst9g01034 759 MobiDBLite consensus disorder prediction 442 476 - -
Spst9g01034 759 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 113 754 - -
Spst9g01034 759 MobiDBLite consensus disorder prediction 1 97 - -
Spst9g01034 759 Pfam RING-like zinc finger 115 144 IPR001841 -
Spst9g01034 759 MobiDBLite consensus disorder prediction 179 294 - -
Spst9g01034 759 MobiDBLite consensus disorder prediction 41 97 - -
Spst9g01034 759 MobiDBLite consensus disorder prediction 450 476 - -
Spst9g01034 759 MobiDBLite consensus disorder prediction 215 229 - -
Spst9g01034 759 MobiDBLite consensus disorder prediction 179 210 - -
Spst9g01034 759 ProSiteProfiles VWFA domain profile. 344 494 IPR002035 -
Spst9g01034 759 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01034 Spst-Chr9 9232060 9234436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01034 107 264 C3H Transcription Factor Family AT3G03550 27.976 1.59e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01034 - - gmx:100782780 1208.74