Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00988 ATGAATGGGAAAGGTGTGAACTTTTTTCTGTCTTCCTTAACCATTTTGGCTGAGCAATCTGAGCAGGGCAACATTGACTCTTCAACAAAACGCGGAGAATCTGCAAAGCTACTTTTCAAAACCGTCACTTGCATCTTCCGCCAAGTCAATATGATGTGGCTCAATAGTCATAGACACAATATTAATATTCTCGCACCACCCACCAAAGTAATTTCCATTCTCATTAAGTTGTTGGCAGGGATCATGTCGAGCAATTCGTTGAAGGAGAACGGTGTTGAGGTTTCTGTGGCGAAGAATTATAGCAATGGCCATGGTGGGGGTGTGAGGGACTTGTATGGTGAGGATAGTGCCACAGAAGACCAGCTTATCACTCCATGGACTTTCTCTGTGGCCAGGTATCACTACTTAGCATTTGACATATCGAAAAAGACAACATGGAATTTGTCTTTTGTAGCTTTTATTTACGTATTTGGATCTGTGGTCATTTGTTTATGTGGTCGGGTTAATGCGGGAGTTTTCTTTCTGGCTATGCTAGACTTGTTTTCTGATCATCTCCAAAAAAAAAATTTGAATTTTTTTCCCCATTTCATGGCATTCTTGGATTATGTGTGGTTGAGTTTGGCATATCACCGGATAGTGGAGTTATTTGATAATGTAATGCTTCATGAGGCTATTATTGGATGCAGTTTGCTGAGAGATCCACGCTACAACAAGGGACTGGCCTTTACCGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCTCCAGCCGTCTTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCTTGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTCTACAAGCTTCTAATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCATGCCAGAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAAGAAAAAGGCAAGATCCTTGAAGTACTGAAAAACTGGCCGGAAAAGAGTATTCAAGTTATAGTTGTGACCGATGGTGAGCGTATATTAGGACTCGGAGATCTTGGCTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACCGCTTTAGGAGGTGTTCGCCCTTCATCTTGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAAAGGCGTGCAACTGGGAAGGAATATGCGGAGCTTCTAGACGAGTTTATGCGTGCAGTTAAGCAGAACTACGGGGAGAAAGTTCTCATACAGTTTGAGGATTTCGCAAATCATAATGCATTTGATCTGCTGGCAAAATACAGCTCATCTCATCTTGTTTTTAACGATGATATCCAGGGCACAGCATCTGTTGTATTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTATTCTTGGGTGCTGGAGAGGCTGGAACGGGTATAGCAGAGCTGATTGCTCTAGAGATTTCAAAACAGACAAAAGATCCAGTGGAAGAGACCCGCAAGAAGATCTGGCTTGTGGATTCAAAGGGGCTTATTGTTAGCTCTCGTCTGGAATCACTTCAGCACTTTAAAAAGCCTTGGGCCCATGAGCATGAACCTGTGAAGGGGCTTCTAGATGCTGTGAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAAGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCGAACCCAACTTCGCAATCTGAGTGCACAGCTGAAGAAGCTTACTCATGGAGCAAGGGTAGAGCAATCTTTGCCAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAATAATGCTTACATATTTCCTGGTTTTGGCTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGGGATGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAAGTATCAGAAGAGAACTATGATAAGGGACTGATTTACCCTCCATTCTCAAACATCAGGAAGATATCAGCCCACATTGCTGCTAAAGTGGCGGCTAAGGCATATGATCTAGGTCTGGCTTCTCATCTGCCTCGACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACCGAAGCTACCGTTGA 2301 0.4411 MNGKGVNFFLSSLTILAEQSEQGNIDSSTKRGESAKLLFKTVTCIFRQVNMMWLNSHRHNINILAPPTKVISILIKLLAGIMSSNSLKENGVEVSVAKNYSNGHGGGVRDLYGEDSATEDQLITPWTFSVARYHYLAFDISKKTTWNLSFVAFIYVFGSVVICLCGRVNAGVFFLAMLDLFSDHLQKKNLNFFPHFMAFLDYVWLSLAYHRIVELFDNVMLHEAIIGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPAVFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQRRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKDPVEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAEEAYSWSKGRAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFSNIRKISAHIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00988 766 ProSitePatterns Malic enzymes signature. 478 494 IPR015884 GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 357 386 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 297 321 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 393 415 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 453 471 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 478 494 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 612 628 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 PRINTS Malic enzyme signature 509 525 IPR001891 GO:0004470|GO:0004471
Spst9g00988 766 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 208 481 IPR046346 -
Spst9g00988 766 PANTHER MALIC ENZYME-RELATED 226 766 - -
Spst9g00988 766 Gene3D - 226 479 IPR037062 GO:0004471
Spst9g00988 766 Pfam Malic enzyme, N-terminal domain 291 471 IPR012301 GO:0004471
Spst9g00988 766 CDD NAD_bind_1_malic_enz 482 760 - -
Spst9g00988 766 Gene3D - 480 766 - -
Spst9g00988 766 SMART Malic_M_2 482 735 IPR012302 GO:0051287
Spst9g00988 766 FunFam Malic enzyme 480 766 - -
Spst9g00988 766 FunFam Malic enzyme 225 479 - -
Spst9g00988 766 Pfam Malic enzyme, NAD binding domain 482 734 IPR012302 GO:0051287
Spst9g00988 766 SMART malic_2 291 472 IPR012301 GO:0004471
Spst9g00988 766 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 482 765 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00988 Spst-Chr9 8788240 8793202 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00988 K00029 - gmx:100818219 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00988 9 8788240 8793202 Spst9g00988 9 8788240 8793202 ECH
Spst9g00988 9 8788240 8793202 Spst4g02318 4 63906552 63915374 ECH
Spst9g00988 9 8788240 8793202 Spst5g00214 5 1847116 1852583 ECH
Spst3g00882 3 12255756 12261269 Spst9g00988 9 8788240 8793202 ECH
Spst4g02318 4 63906552 63915374 Spst9g00988 9 8788240 8793202 ECH
Spst5g00214 5 1847116 1852583 Spst9g00988 9 8788240 8793202 ECH