Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00975 ATGATGGCGGTGAGTTCGGCTTGCAAAGATGGGAGCAAGGTGGCAATGGACAACGGCAAGTACGTGCGCTACACCCCTGAACAGGTGGAAGCACTGGAAAGGCTCTACCATGAATGCCCCAAACCAAGTTCTCTCCGCCGCCAGCAACTCATCAGAGAGTGTCCCATTCTCTCAAACATCGAACCCAAACAGATCAAGGTTTGGTTCCAAAACCGAAGGTGCAGAGAGAAGCAACGGAAAGAAGCGTCACGGCTGCAAGGTGTGAACAGGAAGCTAACAGCAATGAATAAGTTACTCATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTGTATGAAAACAGCTTTTTCCGCCAACAGACACAGAACGCGACGCTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTGACGAGCGGTCAGCGGCACTTGACGCCACAGCATCCACCAAGGGATGCTAGCCCTGCGGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTAGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTTGATGTTCTAAATGTCATGTCCACTGGAAATGGTGGAACCATTGAGCTGCTTTACATGCAGTTGTATGCACCAACAACTTTAGCACCTGGTCGTGACTTCTGGTTGCTGCGCTACACATCAATTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTCAACAATACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGGTATCTGATAAGACCTTGCGAAGGAGGGGGATCCATTATCCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTACCTGAAGTTTTACGCCCACTTTATGAGTCATCAATGCTGCTTGCTCAGAGGACAACTATGGCGGCCTTACGTCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACAGGATGGGGAAGAAGGCCTGCAGCTTTACGTGCACTGAGTCAAAGATTGAGCAAGGGCTTTAATGAGGCTGTCAATGGCTTTGCAGATGATGGCTGGTCTATGTTAGAAAGTGATGGCATTGATGATGTCACCCTTCTGGTGAATTCCTCCCCTAGTAAGATGATGGGTGCTAACCTTGGCTATAACAACAATGGATTTCCTTCTGTGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGAGGGAGCACCGATCAGAATGGGCAGATAGCAGCATTGATGCCTACTCAGCTGCTGCCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGATCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCACGAAGAGTTCATGGAGCTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATACCTGGCGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGACGAGCATGCAGTTGGTACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGGTTTCGCATTATACCTCTTGATTCTAGCTCGGATGCTGCTAGTCCAAACCGGACACTTGATCTGGCTTCTGCACTTGAGGTTGGAACCACAGCAAACAAGGCAGCTGGTGACAACTCAGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCTTTCCAGTTTGCATTTGAAGTCCACCTTCAGGAGAACGTATCAACCATGGCCAGACAATATGTTCGTAGTATCATTGCATCAGTTCAGAGGGTTTCATTAGCACTTTCTCCCTCGCGTTTTGGTTCTCACAATGCGTTTCACTTACCACCCGGCACTCCTGAAGCTCAAACACTTGCTCGATGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAGCTTCTAAAATGTGAAGGCAGTGAGTCCATTCTCAAGTCTCTTTGGCATCACTCAGACGCAGTTTTGTGCTGCTCTTTAAAGACATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAAACAACTTTGGTTGCACTTCAAGACATAACCCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACTCTGTGCACCGAGTTCCCCCAGATAATGCAACAGGGTTTCATGTGTATACAAGGTGGCATCTGTTTGTCGAGCATGGGTAGGCCAGTGTCGTACGAGAGAGCAGTTGCATGGAAAGTATTAAACGAAGAAGAATCAGCTCATTGCGTATGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2523 0.4776 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSILEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYNNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARSGGFGGQVILPLAHTIEHEEFMELIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSSDAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQENVSTMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKTLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCVCFMFINWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00975 840 CDD bZIP 72 111 - -
Spst9g00975 840 Pfam MEKHLA domain 699 839 IPR013978 -
Spst9g00975 840 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Spst9g00975 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 840 IPR044830 GO:0003700
Spst9g00975 840 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Spst9g00975 840 SUPERFAMILY Bet v1-like 163 374 - -
Spst9g00975 840 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Spst9g00975 840 Gene3D - 11 85 - -
Spst9g00975 840 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Spst9g00975 840 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Spst9g00975 840 CDD START_ArGLABRA2_like 158 373 - -
Spst9g00975 840 Pfam START domain 164 372 IPR002913 GO:0008289
Spst9g00975 840 Gene3D - 198 379 IPR023393 -
Spst9g00975 840 SMART START_1 163 373 IPR002913 GO:0008289
Spst9g00975 840 Coils Coil 89 116 - -
Spst9g00975 840 CDD homeodomain 20 80 IPR001356 GO:0003677
Spst9g00975 840 SMART HOX_1 17 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00975 Spst-Chr9 8645422 8650716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00975 16 840 Homeobox Transcription Factor Family AT4G32880 80.482 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst9g00975 START 1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00975 K09338 - gmx:100815727 1639.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00975 9 8645422 8650716 Spst9g00975 9 8645422 8650716 ECH