Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00973 ATGGAAGCACAAGAGTTCTTCCAGAACACCTTCTGCCCTCAATTCCCTTCCGACAACATCACACCCTCCACCGCGAACGCCTCCGCCGCAGACCACTTCATCGTTGAAGACTTCTTCAACTTCTCCAACGAAGACGACGCTCCTCTCACTGATGCCACCTTCGACTCCCTCCCTGCTGACCACTCTCCCACCATAACCACCCTAGACAGCACCACCAGCAACTCCAATTTCCCTGCCGCCGACGCCCATTTCTCCGGTGACCTCTCAGTCCCGTATGATGATCTTGCCGAGTTGGAATGGCTGTCGAAATTCGCGGAGGAATCGTTTTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAACGACGCTGCATCATCGGAAACGCCCGACCCGAATCCGGCGCTGTTCAACCCGCAAGTGTCAGTTCGGGGTAAGGCTCGGAGCAAGCGGACGCGTGGGACTCCATGCAATTGGACCTCTCGCCTCGTTGTCCTCTCTTCGAACACCACGTCGGAGTCTTCCCACTCCGACGCCGGTAAGAAGCCTGCTCCTCGGAGAAGGGATGTCGGAGAGGGCGGCGGAGAGGGCAGGAAGTGCCTGCACTGCGCGACGGACAAGACGCCGCAGTGGCGGACTGGGCCCATGGGTCCAAAAACGCTCTGCAATGCATGCGGCGTGAGGTACAAGTCGGGCAGGCTGGTGCCGGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTGCTGACAAAGCACTCGAACTCGCACCGGAAAGTGCTGGAGCTGCGGCGGCAAAAGGAAATGGTGAGGGTCCAGCAGCAGCAGTTACTCCATCTGCAACATCAGCAGAACATGATGTTCGATGTCCCATCCAACGGTGAGGATTACTTGATCCATCAGCACGTGGGCCCCGACTTCACACACCTCATCTAA 945 0.582 MEAQEFFQNTFCPQFPSDNITPSTANASAADHFIVEDFFNFSNEDDAPLTDATFDSLPADHSPTITTLDSTTSNSNFPAADAHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQNDAASSETPDPNPALFNPQVSVRGKARSKRTRGTPCNWTSRLVVLSSNTTSESSHSDAGKKPAPRRRDVGEGGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLHLQHQQNMMFDVPSNGEDYLIHQHVGPDFTHLI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00973 314 SMART GATA_3 199 249 IPR000679 GO:0006355|GO:0043565
Spst9g00973 314 Gene3D - 199 249 IPR013088 GO:0006355|GO:0008270
Spst9g00973 314 FunFam GATA transcription factor 192 281 - -
Spst9g00973 314 PANTHER GATA TRANSCRIPTION FACTOR 29 278 - -
Spst9g00973 314 PIRSF Txn_fac_GATA_plant 1 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst9g00973 314 MobiDBLite consensus disorder prediction 184 202 - -
Spst9g00973 314 MobiDBLite consensus disorder prediction 127 160 - -
Spst9g00973 314 MobiDBLite consensus disorder prediction 173 202 - -
Spst9g00973 314 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Spst9g00973 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 263 - -
Spst9g00973 314 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
Spst9g00973 314 MobiDBLite consensus disorder prediction 127 141 - -
Spst9g00973 314 Pfam GATA zinc finger 205 238 IPR000679 GO:0006355|GO:0043565
Spst9g00973 314 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00973 Spst-Chr9 8633292 8634557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00973 27 314 C2C2-Gata Transcription Factor Family AT4G32890 49.038 1.04e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst9g00973 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00973 - - gmx:100776588 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00973 9 8633292 8634557 Spst9g00973 9 8633292 8634557 ECH