Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00959 ATGGTAACATCTCCACTTCAGAAGATGTGTAACACCCTCAAGCTCAACAACCCCTTTAAGAACCGTTTGCTAGTAATGTTCACGATGGTTCTTTCTCTCCCCTTCAATGTTCAATCGCAAGACGATGAACAGAACCTGCCGCCACTCCCTCAAACCATTCATCCAAGCAAGGGGATTGTGATAGCAGTGCTCTCCACCTTGTTTGCCATAACACTTATCTTACTTTTATATGTGAAGTTCTGTCGAGTCAACCCTCATCAACTTTTTACCCGAAACTCAAATCTCCAAAACTTTCACCCAACTCGATCAAGATCAAGAGTTTCTGGAATTGACAAAGAAGTGGTTGAAACGCTCCCTTTCTTCACGTTTTCATCCCTCAAGGGGTCCAAAGAAGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACAGAGACTCTAAGACTGCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACATGTCCCCTCTGTAGATGCAGGGTTGAAGCAGGGGACATCGAGAACCTCAACTATTCCCTAAGCTCAAGGTTCCTCCGAGTTCCTTCAAATCTCACGGAGGAGCCAAACCTTGAAATCATCGTTCACAGAGAGCCTTCTCATCGAGGATCGTCGAGAAGATGCTTTAGGGACGCGGGGAATTGCAAGAAACAAGAACTTCTAATTGGTGATAGCAGTGGCGGCGGTAGTGCCACAAAGTGGAACAAACATGTTCACGTGACAAACCATAAAATAGTAATAACTGATGTTTTTACGAGGAGCAGGTGGAGTGACATAAATTCTTCGGACCTGTTGTCGTTGAACAGCGAGATGCTTAATGATGTTTGCAGCACGAGATTCTGCTTCTGTTCTTTGGAAGCAACCGAAGACAGTGGAAAGCTTCACAGGAGTTGGAGTTGTGATGAGGAAGAAAACTCGTTTACAGCACTGAATTCTGCCGAGAAGAGGTGCATGTCCGAGATTGCCAATGTTCCGAGGTTTGCACAAATGAGGAAGGAGAAAAGGATCGGAGAAAGTGTGACATCTAATGAGAGATTGGGGAGAGTTTGGTTGCCAATTGCGCGAAGAACGGTCCAATGGTTTGCGAAACAAGAAAAGAATTGGGGCGAATTAGAACGCAAAACTTTAGCTTCAAATGTTTGA 1197 0.4503 MVTSPLQKMCNTLKLNNPFKNRLLVMFTMVLSLPFNVQSQDDEQNLPPLPQTIHPSKGIVIAVLSTLFAITLILLLYVKFCRVNPHQLFTRNSNLQNFHPTRSRSRVSGIDKEVVETLPFFTFSSLKGSKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRCRVEAGDIENLNYSLSSRFLRVPSNLTEEPNLEIIVHREPSHRGSSRRCFRDAGNCKKQELLIGDSSGGGSATKWNKHVHVTNHKIVITDVFTRSRWSDINSSDLLSLNSEMLNDVCSTRFCFCSLEATEDSGKLHRSWSCDEEENSFTALNSAEKRCMSEIANVPRFAQMRKEKRIGESVTSNERLGRVWLPIARRTVQWFAKQEKNWGELERKTLASNV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00959 398 CDD RING-H2_EL5-like 134 177 - -
Spst9g00959 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 185 IPR013083 -
Spst9g00959 398 SMART ring_2 135 176 IPR001841 -
Spst9g00959 398 FunFam RING-H2 finger protein ATL43 110 184 - -
Spst9g00959 398 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Spst9g00959 398 SUPERFAMILY RING/U-box 116 181 - -
Spst9g00959 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 384 - -
Spst9g00959 398 Pfam Ring finger domain 134 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00959 Spst-Chr9 8469790 8470986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00959 45 385 C3H Transcription Factor Family AT2G20030 41.081 1.20e-72 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00959 K10664 - gmx:100816668 579.326