Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00956 ATGGCAGACATCGCTTTTGGAAGCTCCGACGAGGCCAGTCAGACAGAATGCATTCAGGCCCTCGTCGTTGAATTCATCGCCACCTTCCTCTTTGTCTTTGTTGGCGTTGCTTCTTGCATGTACGCTGAGAAGCATGGTGGCGATCAACTACTGGTGTTGTTTGTTGTGGGCATGGCACATGCATTTGTGACGGCCGTAATGATCTCAGCCGCGCACATCTCCGGTGGCCATCTCAACCCCGCCGTGACACTTGGTCTTCTTATCGGTGGTCACATCACCGTGTTTCGTTCCATGCTCTATTGGATTGATCAAATACTTGCGTCTACAACCGCATGTTATCTCCTTTACTTTCTCACCGGACAGCTAACTCCAGTTCATACGTTAGCAGTGGGAGTGGGAACTTTTCAAGGAATAACGTGGGAGATTGTGTTGACCTTCGGTTTGTTGTTCACTGTCTATGCGACTATGGTGGATCCAAAGAAGGGATCAAATACTGGAATAGGCCCAGTTCTAGTTGGGTTTGTGGTCGGGGCCAACATCATCGCTGGTGGGGGCTATTCTGCTGCTTCCATGAACCCAGCCAGATCTTTTGGGCCTGCCTTGGTTTCTGGCAACTGGACCGATCATTGGATTTACTGGGTTGGGCCTCTCAGTGGTGCTGCCCTTGCAGGTTACGTCTATGAGACCTTCTTCATTGACCGATCTCACGTTCTTCTTCTTCGTGTTGAAGATAACTGA 738 0.5 MADIAFGSSDEASQTECIQALVVEFIATFLFVFVGVASCMYAEKHGGDQLLVLFVVGMAHAFVTAVMISAAHISGGHLNPAVTLGLLIGGHITVFRSMLYWIDQILASTTACYLLYFLTGQLTPVHTLAVGVGTFQGITWEIVLTFGLLFTVYATMVDPKKGSNTGIGPVLVGFVVGANIIAGGGYSAASMNPARSFGPALVSGNWTDHWIYWVGPLSGAALAGYVYETFFIDRSHVLLLRVEDN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00956 245 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Spst9g00956 245 PANTHER AQUAPORIN-8 4 235 IPR034294 -
Spst9g00956 245 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Spst9g00956 245 FunFam Probable aquaporin TIP1-1 2 243 - -
Spst9g00956 245 SUPERFAMILY Aquaporin-like 16 237 IPR023271 -
Spst9g00956 245 Pfam Major intrinsic protein 12 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 CDD MIP 19 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 PRINTS Major intrinsic protein family signature 140 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 PRINTS Major intrinsic protein family signature 210 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst9g00956 245 PRINTS Major intrinsic protein family signature 173 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00956 Spst-Chr9 8458610 8459568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00956 1 237 Major Intrinsic Protein MIP AT2G25810 69.748 2.95e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00956 K09873 - gmx:100811447 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00956 9 8458610 8459568 Spst9g00956 9 8458610 8459568 ECH