Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00909 ATGCAAAAGGAAAAGGAAGCCATTATCAAGGAGGGAAAGGATACAGAAATGGAAGGAACTCATGCAAAAGAGGAAACCCTACCACCTGGATTTCGGTTTCATCCTACCGATGAAGAACTTGTCACTTGCTATCTCGTAAATAAGATATCAGATTCTAATTTTACAGGCAGGGCAATAACTGATGTAGATCTCAATAAATGTGAGCCATGGGAGCTTCCAGGAAAAGCTAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACTGGTGTGAGAACCAATCGAGCAACGAACACGGGGTATTGGAAGACCACAGGGAAAGACAAGGAGATCGTCAACAGTGCAACATCGGAATTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCTAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCACCTTTAGAACTACCAGGCAGGATGAATGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGTGGTGCAAAAAAGTTCCCTTCTTCCAACCATGCAAGAGCAGTGAATCCGTACAGCTTGGAAATAGGACAAAATATTATGCCACCACCAATGATGCAACTGGGAGATCCTGCAGCTCATTTCCTCTATGGACGGAACTACATGAGCAGTGTTGAGTTGGCTGAACTTGCTAGGGTTTTAAGAGGGGGTGGATCAACAAGTAGTGTCAATCAACCAATCCAATCCCAGATGGGCTACCCTACATCAGCAGCAGGAGGAGGATTCACCATTTCAGGACTCAACTTGAATCTTGGAGGAGCAACAACCACAACACAACCCATTTTGCGACCAATGCAACAACCTTCTTCTGTTCCTGTTCATACAATGGCTCAAGTACTTGATATGAATTCCAGCATGATGACAACCGGTTCTCTGGGTGCAGAGAACGTAGGTTATGGATCAGAAATGAGTAACATGAATTCTCACGGGAATAGGTTTATGGGCATGGATCATTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA 1059 0.44 MQKEKEAIIKEGKDTEMEGTHAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIVNSATSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTTRQDEWVVCRVFKKSGGAKKFPSSNHARAVNPYSLEIGQNIMPPPMMQLGDPAAHFLYGRNYMSSVELAELARVLRGGGSTSSVNQPIQSQMGYPTSAAGGGFTISGLNLNLGGATTTTQPILRPMQQPSSVPVHTMAQVLDMNSSMMTTGSLGAENVGYGSEMSNMNSHGNRFMGMDHCMDLDNYWPSY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00909 352 Gene3D NAC domain 36 179 IPR036093 GO:0003677|GO:0006355
Spst9g00909 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 277 - -
Spst9g00909 352 MobiDBLite consensus disorder prediction 1 31 - -
Spst9g00909 352 FunFam NAC domain-containing protein 100-like 36 180 - -
Spst9g00909 352 SUPERFAMILY NAC domain 20 176 IPR036093 GO:0003677|GO:0006355
Spst9g00909 352 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Spst9g00909 352 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00909 Spst-Chr9 7947373 7949321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00909 23 352 NAC Transcription Factor Family AT2G24430 54.728 6.98e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst9g00909 NAM 1.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00909 - - gmx:100804931 634.795