Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00892 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTTATGCAGCAAGCCTTGCTTCAGCAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGATGGAACCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCCGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCACGATCGAGCTTCTGCAGCCCTTGCAATAATGACATTGCACGGACGACAACTTTATGGTCAAGCACTTAAAGTGAATTGGGCCTATGCTAATAGCAGCAGGGAGGATACATCAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGCTTGTGGTGTTTCCTGCATCATACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACTAGCTCCAATGAAGAGAAGAGCAATGACAACCAAAATGCTGTTGTTCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCCGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTGCATTGCCAATTCCATGCACTGGGGGCTGGGGTCATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTTAGATACAACACTCATGAGGAAGCTGCATTGGCCATTCAGGTGGCTAATGGAAGAATAATTCGTGGGAAGAGTATGAAGTGTTCATGGGGTAGTAAACCAACTCCACCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCGACTGCGGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCCGGTCTTTCAGGCCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCATCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGCTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTGA 1269 0.4602 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSVQRLLMQLYLLASQSILVVLMQGLCGITKLVGQKDMVLFLSVIISLWCFLHHTGKWLGNRQIRCNWATKGAGTSSNEEKSNDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQVANGRIIRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTANSSRQQLMYYR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00892 422 Gene3D - 228 328 IPR012677 -
Spst9g00892 422 SUPERFAMILY RNA-binding domain, RBD 239 333 IPR035979 GO:0003676
Spst9g00892 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 190 327 - -
Spst9g00892 422 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Spst9g00892 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 324 IPR000504 GO:0003723
Spst9g00892 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Spst9g00892 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 317 IPR000504 GO:0003723
Spst9g00892 422 MobiDBLite consensus disorder prediction 207 249 - -
Spst9g00892 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Spst9g00892 422 SMART rrm1_1 56 125 IPR000504 GO:0003723
Spst9g00892 422 SMART rrm1_1 251 320 IPR000504 GO:0003723
Spst9g00892 422 FunFam Oligouridylate-binding protein 1C 227 328 - -
Spst9g00892 422 Gene3D - 1 140 IPR012677 -
Spst9g00892 422 FunFam Nucleolysin TIAR-like protein 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00892 Spst-Chr9 7822502 7829383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00892 56 315 Eukaryotic Initiation Factors Gene Family AT4G34110 25.714 1.48e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00892 K13201 - gmx:100777108 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00892 9 7822502 7829383 Spst9g00892 9 7822502 7829383 ECH