Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00852 ATGGAGGATCAAGCAAATCAAGAGCCACAGTCACGTGATGAAGAGGAGGATTCTAAGAAGGAAGAAGAGGAATTGATTGTGAATGTTAACAAACTCATGGAGAAGATAACTTCTGCACCTGATAACCCTAAGGCAACCGTTCTCCATGCGCTTGCCTCTATTCTCGAAACGCAAGAGTTACGATACATGGAAGAGAGTGGGCATTCATCCTCCAGTACTGCCCGTGCTGCGCATGTCATTGGTCGCCTTGGTGGTTTAATTAGGGAAAATGATGAGTTTTTTGAGTTGATATCTTCGAGGTTTCTGTCAGAAACAAGATACTCAACATCCATTCAAGCGGCTGCTGGCAGACTTCTCCTATGCTGTTCCCTAACATGGATTTATCCTCATGTTTTTGAAGAACACGTCATGGAAAACATAAAAAATTGGGTGATGGATGATAACACTGGGTTGCCTACTGAAGAGCAGAATCTGAAGCATAGTTCAGGGAGAAGGGAGGCATCGGACTCTGAAATGTTGAAAACCTATTCTACTGGACTCCTTGCTGTGTGTTTGGTCGGTGGAGGTCAAATAGTGGAAGATGTTTTGACTTCTGGCTTGTCAGCTAAGCTTATGCGATATCTTCGTTTACGTGTTCTGGGAGAGACAAGTAGCAACCAGAAAGATGTTACTCATGCAACGGAGAGTAGGCATGCATCTGCAAATACTTCAGGTAGAGGTAGAGATGATGGTCGTGGTAGATTTCGCCAGTTCCTTGAACCAAATCATTTAGATGATACTAGGATGATTGATGAGAGATCATTAGATGATGCAACTCTTGAAAGGGGCCCAGATAGAAGCATTAGTGGACAAACACTCCAAGAAGGATCTTGGATAGAAGGTGAACCACCTGATGGGCTCAGTGAAGGCGCTGATGTCCAGGAGGTAGATTCTGATGCAGAGGATAGATGGTGCTGTAGAGATATACGTGATGGGAGGATAAAATATGGTGAACACGATGACAATGTTAGAGATGACTCTTCAAGGCGGCGAACAAACCGTGGATGGGGAAGATCTAGAGGGAAAGGAAGGGTCAATGAAGGGACTGTAGAAAGTGATCCCATTTTATCATCTCCTGGCTCTGGCAGTAGATTAGCACAGGGGCGGAGTGTTAGAGATAGAAGTGTATTGAGGAATGTTGATGGTAGGAAGGTGGCTGAGTCTAAGAAGACCCTTGGCAGGACCTCTTTGGAGGCTTCTGGTTTTGAAAGAGAGGATCATGATGATTGTTTCCAAGAATGCCGAATTGGGAGTAAAGATATAACTGATCTTGTCCGGAAAGCAGTTCAAGCTGCTGAAGCTGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTGGTTAAAACTGCAGCTTCAGAGGAATATAAATCCACTAACGACGAAGAAGCAGCTTTTTTGGCTGCTTCTAAAGCTGCATCAACTGTTATTGATGCTGCATGTGCAGTGGAGGTTTCAAGGAGTTCTATTGGCAACAATAATGTAAAAGAGAATGAGAGTGGCAAAGAAACAGAAGCTAATGAGGACTTGGAAGAGTACTTCATCCCAGATACTCAATCACTTGCACAGTTGAGGGAAAAGTATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGGGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATCGGGAGGCATCCAAGGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATCTGTGCTTTGGCTGCACATAGGAAATTTGCTGCACTTTTTGTGGACCGTGGGGGAATGCAAAAGCTGCTTGCTGTCCCTAGAATGGCACAGACTTTCTTTGGTCTTTCTTCTTGTCTATTTACTATTGGTTCTATTCAGGGGATAATGGAAAGGGTTTGTGCTCTTCCGTCACAAGTTGTTTATCATGTTGTTGAGTTAGCTCTCCAACTTCTTGACTGCAATCAAGACCAGGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTTCATTTGTTTTCAGAGCTGTTCTTGATGCCTTTGATTCCCTGGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTCTGTAAGATCAGGAGTAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGAGCACTTCGAAATGATCGATCATCTGCCGAAGTGCTGACATCGTCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTAAGGCAATATTTCAGGGCCCATCTCCTTGTATTAGTGGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTTCAAGTGTAAGGGCAGTGTACAAGCCACTAGATATTAGTAATGAGGCAATGGATGCAGTTTTCCTACAATTACAAAAAGATCGGAAGTTAGGTCCTGCATTTGTTAGAACACGTTGGCTAGCAGTTGAGAAGTTCTTGGCATCTAATGGACATGTTACCATGCTGGAATTGTGTCAGGCCCCACCTGTGGAGCGATATTTGCATGATTTGCTTCAGTATGCTTTGGGTGTTTTGCACATTGTTACATTGGTACCTAGCAGTCGGAAGATGATCGTAAATGTAACATTAAGCAACAATCGTGTTGGTATTGCAGTAATTTTGGATGCTGCTAATATAGCTAGTAATCATGTGGACCCCGAGATAATTCAACCAGCATTAAATGTTTTAGTCAACCTGGTTTGCCCTCCTCCTTCAATAAGCAATAAACCGGCAATGGTTGCACAAGGTCAGCAGTTGGCGTCTTCCCAGACATCTAATGGTCCTCCCTCGGAGGCTAGAGATAGAAATGTGGAACGGAATGTTTCAGATAGAGCTGTTCACTCTACTAGCCAGATTGATCCTAGGGAGAGGAATGGGGAGTCCAATGCTGTAGAGCGAGGCAGTGCTGCAGGACTAAGTACACAGCCTGCTAACAGTACTCCACAAACTCCTGTTGCTTCTGCAACATCAGGATTGGTTGGTGACCGAAGGATATCTTTGGGTGTGGGAGCAGGTTGTGCAGGCCTTGCTGCACAATTGGAACAAGGGTATCGTCAAGCAAGAGAGACTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCACGGATATATTCACCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGAGTTCTACTTGGATTAGCCAGAGATGATACAATTGCACACATATTGACAAAGCTTCAGGTTGGTAAAAAGCTATCAGAGCTGATTCGGGATTCAGGTAGCCAAACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCTCAAGCTGCCATTGAGCTTATTGGGATTGTGACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACTTTAAGGCGCATTGAAAGAGCAGCTATTGCTGCTGCCACTCCTATTACTTACCATTCAAGGGAACTTTTGCTTCTAATTCATGAACACCTACAAGCATCTGGATTGACATATGCTGCTTCTGCGTTGCTTAAAGATGCTCAGTTGACTCCTTTGCCATCATTGGTTCCTCCCTCTTCTCTTGCACAACAGCCCACAACACAGGAAGCTTCTTCAACACAAATTCAGTGGCCCTCTGGCCGTACTCCTTCTGGATTTCTCTCTAACAAATTAAAGCTTATTGCGAAGGATGAGGATGCCTGCTTGAAAAGTGATCCTGTCTCCGCAAAAAAAAAATCATTGACTTTCTCATCATCTTTTCATTCAAGACTCCAACTTCTTGACTCTCAGAACTCATCAGTGAGGAAATTGTCAAATACTGCTAAAGATGCTTCAGAAAGTAGTGTGGCAGAGACTGGATCTGAATCTTCGGTGAAGCATAACATTGAAACTGGAGTTCAGTTTAAAACTCCAATAACCTTGCCAGCAAAACGGAAGTTATCTGAGTTGAAGGACATATCAATGTTTTCTTCATCTGGAAAACGATTAAATGTTGGGGATCAAGGACTTCGCTCTCCTATTTGTTCAAGTGCAATTCGTAAAAGCTGCCTGCAGCCTGATGCAGTTGGGCTTTTCACTCCAACTTGTAACCTGAAAAATCAACATAGCCGTTGTATGGGTGATTTGGTGGATGAGAATCAGTGCAGTGTATCAAATCTAGGTCAAATGACTCCATCCTCCCAAGTATTAAATGACTTTCAGCCCAGCAACCCTGAACGTGTAACATTAGATTCTCTAGTGGTTCAGTATTTGAAGCATCAGCACCGCCAATGCCCAGCTCCTATTACAACACTTCCTCCACTGTCACTTCTGCACCCGCATGTCTGTCCTGAACCAAAGCGGAGCCTTGATGCCCCTTCTAATGTGACAGCTAGGCTTGGTACACGTGAATTTAAATATATGTATGGGGGAGTGCATGGGAATCGCAGGGATCGGCAATTTGTTTACAGTCGGTTTAGACCGTGGCGCACTTGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCCTCCCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGACTCCAACAACAGCAATGTAGTGGAGAGCTTCACAGGTCATCAGGCTCCTCTGACTCTTGTTCAGTCTTTTGTTGCTGGTGAGACCCAGCTATTACTTTCTTCAAGCTCCCAAGATGTTAGACTGTGGGATGCAACTTCAATTTTAGGTGGTCCTAGCCATTCATTTGAAGGATGCAGGGCAGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCAGCCCTGTCATCTGAATCTTCACGGCGGGAGATCCTCTTGTATGATATCCAAACATGTCAGTTAGAGTCCAAGTTGTCAGATACTTTTACAACTTCTACTGGGCGAGGTCATGTTTATTCTTTAATCCATTTTAACCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTGTGGGATCGACGTGTCTCTGGGCCTGTTCATCGCTTTGATCAGTTTACAGATTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGGAAGTTCAGATTGCTACGCAGTGTGCCTTCATTGGATCAAACTTCAATTACATTCAATGCGCGTGGTGATGTAATGTATGCTATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACTCGACGTGTCAAGCATCCTCTTTTTTCAGCTTTCCGCACAGTGGATGCAATAAATTATTCTGACATTGCGACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCTACAGATTCATTTGTTGGGCTGATTACTATGGATGATCAGGATGAGATGTATGCTTCTGCCAGAATCTATGAAATTGGTCGTCGGAGACCAACTGATGATGACTCCGATCCTGATGATGCTGAAAGTGAGGAGGAAGATGAGGATGACGATGATGACGACGGTGATGTTGATCCTCTTTTAGGTCCTGGGCTTGGTGGGGATAGTGGCAGTGATGCTGATGACATGAGCAATGACGACGAGGACGATGATAGCGTGAGTGATCTTGATGAAGATGAAGATGGAGATTTTATTTTAGATGATGTTGACTTTGATGGAGGACCTGGTATATTGGAGATTGTGACAGAAGGTGACGAGGACGATGATGATAGTCAGGTACTTGAATCCTTAAGTAGTGATGATGAGGATTTTGTGGGTAATGGCTTTGGTTATTAG 5820 0.4423 MEDQANQEPQSRDEEEDSKKEEEELIVNVNKLMEKITSAPDNPKATVLHALASILETQELRYMEESGHSSSSTARAAHVIGRLGGLIRENDEFFELISSRFLSETRYSTSIQAAAGRLLLCCSLTWIYPHVFEEHVMENIKNWVMDDNTGLPTEEQNLKHSSGRREASDSEMLKTYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRLRVLGETSSNQKDVTHATESRHASANTSGRGRDDGRGRFRQFLEPNHLDDTRMIDERSLDDATLERGPDRSISGQTLQEGSWIEGEPPDGLSEGADVQEVDSDAEDRWCCRDIRDGRIKYGEHDDNVRDDSSRRRTNRGWGRSRGKGRVNEGTVESDPILSSPGSGSRLAQGRSVRDRSVLRNVDGRKVAESKKTLGRTSLEASGFEREDHDDCFQECRIGSKDITDLVRKAVQAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEAAFLAASKAASTVIDAACAVEVSRSSIGNNNVKENESGKETEANEDLEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSIQGIMERVCALPSQVVYHVVELALQLLDCNQDQARKNAALFFAASFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGVNSGALSLSNSGALRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNISSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHVTMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPAMVAQGQQLASSQTSNGPPSEARDRNVERNVSDRAVHSTSQIDPRERNGESNAVERGSAAGLSTQPANSTPQTPVASATSGLVGDRRISLGVGAGCAGLAAQLEQGYRQARETVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTYAASALLKDAQLTPLPSLVPPSSLAQQPTTQEASSTQIQWPSGRTPSGFLSNKLKLIAKDEDACLKSDPVSAKKKSLTFSSSFHSRLQLLDSQNSSVRKLSNTAKDASESSVAETGSESSVKHNIETGVQFKTPITLPAKRKLSELKDISMFSSSGKRLNVGDQGLRSPICSSAIRKSCLQPDAVGLFTPTCNLKNQHSRCMGDLVDENQCSVSNLGQMTPSSQVLNDFQPSNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESFTGHQAPLTLVQSFVAGETQLLLSSSSQDVRLWDATSILGGPSHSFEGCRAARFSNSGNVFAALSSESSRREILLYDIQTCQLESKLSDTFTTSTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFSAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDGDVDPLLGPGLGGDSGSDADDMSNDDEDDDSVSDLDEDEDGDFILDDVDFDGGPGILEIVTEGDEDDDDSQVLESLSSDDEDFVGNGFGY 1939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00852 1939 MobiDBLite consensus disorder prediction 218 234 - -
Spst9g00852 1939 PANTHER VPRBP PROTEIN-RELATED 15 1936 IPR033270 GO:0016567
Spst9g00852 1939 SUPERFAMILY WD40 repeat-like 1510 1740 IPR036322 GO:0005515
Spst9g00852 1939 SMART WD40_4 1508 1548 IPR001680 GO:0005515
Spst9g00852 1939 SMART WD40_4 1551 1591 IPR001680 GO:0005515
Spst9g00852 1939 SMART WD40_4 1596 1634 IPR001680 GO:0005515
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1909 1925 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 218 312 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1294 1315 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 330 386 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1868 1896 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 330 346 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 992 1014 - -
Spst9g00852 1939 SUPERFAMILY ARM repeat 666 1137 IPR016024 -
Spst9g00852 1939 FunFam DDB1-and CUL4-associated factor homolog 1 1506 1833 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1212 1238 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 364 378 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1832 1853 - -
Spst9g00852 1939 Coils Coil 12 32 - -
Spst9g00852 1939 SMART Lish 1176 1208 IPR006594 GO:0005515
Spst9g00852 1939 ProSiteProfiles LIS1 homology (LisH) motif profile. 1176 1208 IPR006594 GO:0005515
Spst9g00852 1939 MobiDBLite consensus disorder prediction 935 1015 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 1819 1939 - -
Spst9g00852 1939 MobiDBLite consensus disorder prediction 935 956 - -
Spst9g00852 1939 Gene3D - 1509 1833 IPR015943 GO:0005515
Spst9g00852 1939 MobiDBLite consensus disorder prediction 235 276 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00852 1535 1741 U-box Gene Family AT2G33340 25.446 7.22e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00852 K11789 - gmx:100796030 3066.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00852 9 7495892 7504402 Spst9g00852 9 7495892 7504402 ECH