Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00844 ATGAAACCACAAGACTCTTTTGCAGAAGTATCACACTTGAAGTGCTACGTACCTATGGCTCAATATACCGTCAGATGCTTTCAGTACTTCGGGGAGGATGAACTCCAGAGAGCCAAAAGAAATGAGAAGGAACAAAACAGTCAGGGTCATGTTGAGGTTCTGAACTTGCATTCAGACTTTAAAGTGTTTTGCAGATCAAATCACCATGCTATCAGTCTACCTAAATCCCATACTACTAGGCTGACCAGAATGGGTTATAATCTTTGTAACCTAATATCACTTAGTAGATATTCCTTGTTGGTGTTCCTTTTAACTAACTTGAATGTTCTTGGTCTTCTGACTGCTGACTGTAATTGGGAATTTGGTCTGTTGAGATCTTTTGACTTCTGTGCTACAATCGCCAATTCTGGGGTGGTGGTTTCATGGCACCTGTTACACAGATTGTATGATGATACATGTATGTGCAGCAGTGAAGATTCTGTGAGTAAGTTTCAGTTCTTGGAGGAGTCATGCAGACCAGCCAAGTTGGAATGTCAATTGGTTGGCTCCAGTAAAGTGGGACTTGGTTCCAGAAGTTCTTCAAGAAATCAAGTGATCATTCTATTGCTGGCCAACCTGAATTCAATTTTGTTGTTGCTGCTTTCAATTGATCTTCAGCAGTGTGGAAGAAAGCAACAGTGCATTCAGTGTTTACTGATAGCTACTAGCATCATGGGAGTGGTGGCAGTATTGCACTCTGAGACTCTGCCATTTGACTGCAATGACATTAAGCATATGACTGAGAAAGATGTGTATGATCTACCATCAAACGAAGAGGACATACTTGGAGAAGAATCAAGTCAATTAACAGATCACAAAAAGATCAGTAATTTGCGAGAGAGAGGATATATGGAATATGGATGTCAACATTACCGCAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGGTTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGATCAGAAGCTTAGACACGATATTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGCATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAATATCATTGCAGTGGCTGTGGAATATGCAGAACTGGAGGATATGAAAATTTCTTCCACTGCTACAAATGTGGTTGTTGCTATCCAACTCAGCTGAAAAACAGTCACCCTTGCGTAGAAGGGGCAATGCATCATGATTGCCCCATTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTTTGCTCTGTGGACATACAATACATAAGATCTGCCTGAAGGAAATGAGGGAACATCTCCAGTATACATGCCCTCTCTGCTCTAAGTCAGTTTATGACATGTCAAAGATTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCATATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAAAAGTTCTCACGTCCAGTTCCATCTTGTTGCTCAAAAGTGCTTAAACTGCAAATCCTACAACACACGACAAACATGA 1635 0.4086 MKPQDSFAEVSHLKCYVPMAQYTVRCFQYFGEDELQRAKRNEKEQNSQGHVEVLNLHSDFKVFCRSNHHAISLPKSHTTRLTRMGYNLCNLISLSRYSLLVFLLTNLNVLGLLTADCNWEFGLLRSFDFCATIANSGVVVSWHLLHRLYDDTCMCSSEDSVSKFQFLEESCRPAKLECQLVGSSKVGLGSRSSSRNQVIILLLANLNSILLLLLSIDLQQCGRKQQCIQCLLIATSIMGVVAVLHSETLPFDCNDIKHMTEKDVYDLPSNEEDILGEESSQLTDHKKISNLRERGYMEYGCQHYRRRCRIRAPCCNEVFDCRHCHNEAKNNINIDQKLRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGYENFFHCYKCGCCYPTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKICLKEMREHLQYTCPLCSKSVYDMSKIWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQKCLNCKSYNTRQT 544
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00844 544 ProSiteProfiles Zinc finger CHY-type profile. 294 370 IPR008913 GO:0008270
Spst9g00844 544 SUPERFAMILY CHY zinc finger-like 298 372 IPR037274 GO:0008270
Spst9g00844 544 ProSiteProfiles Zinc finger RING-type profile. 437 480 IPR001841 -
Spst9g00844 544 Pfam Zinc-ribbon 485 542 IPR039512 -
Spst9g00844 544 ProSiteProfiles Zinc finger CTCHY-type profile. 372 436 IPR017921 -
Spst9g00844 544 SUPERFAMILY Zinc hairpin stack 373 430 IPR037275 -
Spst9g00844 544 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 206 544 - -
Spst9g00844 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 498 IPR013083 -
Spst9g00844 544 SUPERFAMILY RING/U-box 436 486 - -
Spst9g00844 544 Gene3D - 508 544 - -
Spst9g00844 544 CDD RING-H2_Pirh2-like 436 480 - -
Spst9g00844 544 Pfam CHY zinc finger 301 382 IPR008913 GO:0008270
Spst9g00844 544 SMART ring_2 437 479 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst9g00844 Spst-Chr9 7400422 7411051 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00844 299 542 C2H2 Transcription Factor Family AT3G18290 40.637 2.11e-51 187
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00844 9 7400422 7411051 Spst9g00844 9 7400422 7411051 ECH
Spst8g01486 8 15058398 15063160 Spst9g00844 9 7400422 7411051 PCT