Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00793 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTGAAGAGAAGGGTGTGGCTAGGGACGTTTGAGACAGCTGAGGCTGCAGCAAGGGCTTATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCCAAGACCAACTTCCCCACCTCGAAGAACCAAGCTGAAGCTGATGCCACCAGCACCACCCCTTGTGTTGGTGTTGGGGGTGGTGGTGCTGGTGGTGCTCATGACAACACTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACCAAGCTGAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTGAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTGGAGCTTGGGAAGAAACAGACCGAGGGTGAATCAACACTGTCGCCACACAGTAGTACTAATGACACTGCTGGGATCAATGAAGTAGAAGAAGAAGAAGAGGAGGAGGATAGAGTTGCTTTGCAGATGATCGAAGAGCTACTCAATTGGAACTAG 606 0.5099 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEADATSTTPCVGVGGGGAGGAHDNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTEGESTLSPHSSTNDTAGINEVEEEEEEEDRVALQMIEELLNWN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00793 201 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Spst9g00793 201 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Spst9g00793 201 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Spst9g00793 201 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Spst9g00793 201 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Spst9g00793 201 Coils Coil 176 196 - -
Spst9g00793 201 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Spst9g00793 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 162 - -
Spst9g00793 201 MobiDBLite consensus disorder prediction 156 188 - -
Spst9g00793 201 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Spst9g00793 201 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Spst9g00793 201 MobiDBLite consensus disorder prediction 158 175 - -
Spst9g00793 201 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00793 Spst-Chr9 6845099 6845891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00793 1 200 AP2-EREBP Transcription Factor Family AT5G25390 58.706 4.08e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g00793 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00793 - - gmx:100806821 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00793 9 6845099 6845891 Spst9g00793 9 6845099 6845891 ECH
Spst3g04937 3 101055795 101056563 Spst9g00793 9 6845099 6845891 ECH