Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00792 ATGTTAAGTTGCATAATGCCACTTTTGCTGCATGGGACGCTCGATGTGATCATATGTGAGGTGGATACACTACCAACTCTTAACGACTGCGATTTCAACCTCTGCTGCAAGGGTACAAGTAGAAGCGTGAAGAAGAGATTCCTTTCCCAACTCAAGAGTTGTTTGTTCTGTCAATGCCAATGCCAGCCCGGGTTTACCCAAACGGGCCTCTATGCAACAGTTGATTTAGATAAGGCAAGAGTTGCAAGGACTAGACTGTTAAATGATCAACCCTCCAACCCCAGGTGGAATGAGACCTTTCACATATACTGTGCACATTTGATCTCCTATGTTATATTCACTGTCAAACAAAAAGACCCAATTGACGCAACTCTAATTGGAAGAGCTTATATCCCTGTTGAGCAAGTTGTGAAAGGTAACATAGTGGACAAATGGGTAGAAATATTAGACGAGGATCATAACCCCATACCAAGTGACTCTAAAATCCATGTCAAAATGCAATTCTCTAGTGTTAGGAACGACATAAGCTGGTCTGAAGGAATAATAGGTCCAAGGTTTCAAGGAGTTCCCCACACCTTCTTCAGTCAAAGAACTTTATGCAACGTTACTTTGTACCAAGATGCCCATGTTTCCGATAGTTTTAAGCCGTTGATTCCCTTGTCTCTAAGAAAGCATTATGAGTTTGGGAAATGCTGGGAGGATATTTTCAATGCCATTTCGGATTCCAGGTACTTTATTTACATAACCGGTTGGTCTGTGTACACTGAAATAACCTTGATTAGGGACCCCATGCAGCCCGAAAGAATCACCCTTGGGGAATTGCTCAAGAGGAAAGCTGAGGAAGGTGTTATGGTTCTTATGCTTGTTTGGGATGACAGAACATCTGTGCCAGATTTCAAGGAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGATTACTTTAAAAACACAAAGGTGAATTGTGTTTTGTGTCCAAGGAACCCGGATGATGGAAGAAGCATAGTGCAAGGTTTTGAAACTTCAACAATGTTCACTCATCACCAAAAGACTATAGTTGTTGATAGTCAAGTTGTCGGGGCTGCTATGGGGCAACGACAGAAGAGAACAATAGTAAGTTTTGTAGGAGGCATTGATCTTTGTGATGGGAGATACGATACTCAAGAACATCCTCTATTTTCAACTTTGGATACAGTGCATAAAGATGACTTCCATCAGCCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCACTGCAAGTTAGAAGGGCCTGTTGCTTGGGATGTTTTGTTCAATTTTCAACAACGGTGGGAGAAGCAGGTTGGGAATCAGCTCCTATTCCCTTCAAGCATGCTTAACGAGTACTTTGTCCCTCGATCCACTGCGGCATTGACAAATGATAATGACACATGGAACGTTCAGTTGTTTAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCCCTCAAGACCCAGAAGAAGCAGCTGAATTAGGCCTTGTTAGTGGGAAAGACAACATCATCGATAGAAGTATTCAAGATGCTTATATAAATGCTATTCGACGAGCCCAAAACTTCATCTACATTGAAAACCAATATTTCCTAGGGAGTTCATATGCTTGGCAAGCATCTGATATTGTAGTCGAGGATATTGGTGCATTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGGAGGGGAAAGGTTTTCTGTGTATGTTGTTATACCAATGTGGCCAGAAGGCATACCTGAGAGTGCTTCAGTCCAAGCAATATTAGACTGGCAAAGGAGAACAATGGAAATGATGTATGCTGATATAGCTCAAGCCATTGAAAGAACTGGAACTGAAGCCCACCCAAGGGACTACTTGACCTTTTTCTGCCTTGGAAACCGTGAAGGTCAGAAGGGTGGAGAGTATACGCCTACAGAGGCACCGGAACCCGACAGTGATTACAGTAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGACGATGAATACATAATAATTGGTTCTGCCAACATAAATCAAAGATCAATGGATGGAGCAAGAGACAGTGAGATTGCAATGGGTGCATTTCAGCCACGCCATTTAGCAGTTTATGATAGACCACCCAGAGGACAAATATATGGATTTCGACGTGCCCTATGGTATGAACACCTAGGGGATCCTGATGATGGTACAAACATTTTTGGCGATCCTAAAAGCAAGAAATGCATCAGGCTTGTGAATCATCTTGCTGAAACCAACTGGGCCATATATTCTGAGGGAACGTTTGATGAGACTAGAGAATTTCACCACCTCATGCGTTATCCCATTGAAGTAACCAACAAGGGAGCCATAAGGAGCCTTCCAGGGCTTGAATATTTTCCTGACACCAAGGCTCGGATTTTGGGTTCTAAATCAGACTATCTTCCTCCAATTCTCACAACCTAG 2505 0.4275 MLSCIMPLLLHGTLDVIICEVDTLPTLNDCDFNLCCKGTSRSVKKRFLSQLKSCLFCQCQCQPGFTQTGLYATVDLDKARVARTRLLNDQPSNPRWNETFHIYCAHLISYVIFTVKQKDPIDATLIGRAYIPVEQVVKGNIVDKWVEILDEDHNPIPSDSKIHVKMQFSSVRNDISWSEGIIGPRFQGVPHTFFSQRTLCNVTLYQDAHVSDSFKPLIPLSLRKHYEFGKCWEDIFNAISDSRYFIYITGWSVYTEITLIRDPMQPERITLGELLKRKAEEGVMVLMLVWDDRTSVPDFKEDGLMATHDQETADYFKNTKVNCVLCPRNPDDGRSIVQGFETSTMFTHHQKTIVVDSQVVGAAMGQRQKRTIVSFVGGIDLCDGRYDTQEHPLFSTLDTVHKDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLFNFQQRWEKQVGNQLLFPSSMLNEYFVPRSTAALTNDNDTWNVQLFRSIDGGAASGFPQDPEEAAELGLVSGKDNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYAWQASDIVVEDIGALHLIPKELSLKIVSKIEGGERFSVYVVIPMWPEGIPESASVQAILDWQRRTMEMMYADIAQAIERTGTEAHPRDYLTFFCLGNREGQKGGEYTPTEAPEPDSDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPRHLAVYDRPPRGQIYGFRRALWYEHLGDPDDGTNIFGDPKSKKCIRLVNHLAETNWAIYSEGTFDETREFHHLMRYPIEVTNKGAIRSLPGLEYFPDTKARILGSKSDYLPPILTT 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00792 834 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 675 702 IPR001736 GO:0003824
Spst9g00792 834 FunFam Phospholipase D 488 721 - -
Spst9g00792 834 Gene3D C2 domain 48 178 IPR035892 -
Spst9g00792 834 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 57 170 IPR035892 -
Spst9g00792 834 SUPERFAMILY Phospholipase D/nuclease 175 458 - -
Spst9g00792 834 CDD C2_plant_PLD 6 168 - -
Spst9g00792 834 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Spst9g00792 834 SMART pld_4 675 702 IPR001736 GO:0003824
Spst9g00792 834 SMART pld_4 344 385 IPR001736 GO:0003824
Spst9g00792 834 Pfam Phospholipase D Active site motif 676 702 IPR001736 GO:0003824
Spst9g00792 834 Pfam Phospholipase D Active site motif 344 385 IPR001736 GO:0003824
Spst9g00792 834 Gene3D Endonuclease Chain A 495 719 - -
Spst9g00792 834 Gene3D Endonuclease Chain A 221 479 - -
Spst9g00792 834 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 344 385 IPR001736 GO:0003824
Spst9g00792 834 FunFam Phospholipase D delta 222 464 - -
Spst9g00792 834 SMART C2_3c 13 145 IPR000008 -
Spst9g00792 834 Pfam Phospholipase D C terminal 752 824 IPR024632 -
Spst9g00792 834 Pfam C2 domain 65 147 IPR000008 -
Spst9g00792 834 SUPERFAMILY Phospholipase D/nuclease 519 748 - -
Spst9g00792 834 PIRSF PLD_plant 2 834 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Spst9g00792 834 PANTHER PHOSPHOLIPASE D 9 823 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00792 Spst-Chr9 6822621 6826079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00792 9 834 Phospholipase D Gene Family (Wang group) AT3G15730 63.691 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00792 K01115 - gmx:100791688 1450.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00792 9 6822621 6826079 Spst9g00792 9 6822621 6826079 ECH
Spst9g00791 9 6816877 6820097 Spst9g00792 9 6822621 6826079 ECH