Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00776 ATGGAACTTCAGTTAGGTCTTGCTCTCCCCACTCACAACTCCGATGAGGAATTCAAGCTTACCAAGTCCAAACAGATAGTGAGTTTAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGAGGAAAGCAAGTCAAACACAAGCGCAGCTTCGAAGAGTCCTTTGAAAGTTTTTTGAAACCTTTGCCTTTACTAGTATGGAGTGGACAGCCAAATGAAGAAGATGATCGTATTCAAAAGGTGCAAAGAAACATTCACGCACCAAACAGGAACGGTGATGAAGAAAAACATTTGGTGGGATGGCCACCAGTTAAATCATGGAGGAGGAAAGAACTTCATCACCATCATCCTGCAACAGGCCAAATCAGAAACGACAGGATTCGCGCTAATGAGAACCGAAGTAGAGAATCAAACTCTTTATATGTCAAAGTTAACATGGAAGGGGTAGCCATTGGAAGGAAAATCAATTTGAGGCTTTTCAACTCGTATCAGACACTTACAAACACCTTGACGAACATGTTTGCCAAGTACCAAAAATTGGAGGAAACCAGAGAAAGTTACACACTCACCTTTCAAGACGAGCAAGGGAATTGGCTGCAAGTAGGACATGTTCCATGGCAATCCTTTATTGATACGGTGCGGCATTTGGTGATACTGAAGAATGGAAGTGAAACTGTTTGA 678 0.4248 MELQLGLALPTHNSDEEFKLTKSKQIVSLELWRPSCGSERGKQVKHKRSFEESFESFLKPLPLLVWSGQPNEEDDRIQKVQRNIHAPNRNGDEEKHLVGWPPVKSWRRKELHHHHPATGQIRNDRIRANENRSRESNSLYVKVNMEGVAIGRKINLRLFNSYQTLTNTLTNMFAKYQKLEETRESYTLTFQDEQGNWLQVGHVPWQSFIDTVRHLVILKNGSETV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00776 225 ProSiteProfiles PB1 domain profile. 138 222 IPR000270 GO:0005515
Spst9g00776 225 Pfam AUX/IAA family 2 220 IPR033389 -
Spst9g00776 225 Coils Coil 162 182 - -
Spst9g00776 225 Gene3D - 133 224 - -
Spst9g00776 225 MobiDBLite consensus disorder prediction 108 129 - -
Spst9g00776 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 220 IPR003311 GO:0005634|GO:0006355
Spst9g00776 225 SUPERFAMILY CAD & PB1 domains 132 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00776 Spst-Chr9 6673446 6674764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00776 129 217 B3 DNA Binding Superfamily AT3G61830 29.213 2.52e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst9g00776 AUX_IAA 9.1e-36 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00776 K14484 - gmx:100783359 379.022