Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00752 ATGGCGTACCACAATCCTCAAGACCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCAAACTCTCACGCACGCATCCCTCCTCTCCGACCCTACCTCCAAACCTCCCTCTGATCCTCACCAGCCTGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCGCGCACTACACCGACACCACCACCACCACCAACAATAATAGCAACAACAACAACAACAACTCCGACACCAACGTTAGCGCTGCCAACAACGGCACCAACTTCCTCAACCTCCACACTGCCGCCTCGGACTCCGGCCAATGGCTCGCGCGCCCGATCCTCCACCGCAACCAGAGCGAGGTCATCGATGACGTCGCGGCGGCTGGCGACTCCTCCATGGCCGGAGCCGGATCCGGTGATTTGAAGAGCGAGGCGGCGGCAGTGGAGGGCGGCAGCGACGGGCTGATGAACTGGCAGAATGCGAGGTTCAAGGCGGAGATTCTAGCGCACCCAATGTATGAACAGCTTCTGTCGGCACACGTGGCGTGCCTTCGGATCGCCACGCCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTCGCACAGTCCCAAAATGTGGTCGCCAAGTACTCTGCTTTCGGACAAGCCATCGTTGGGGACGACAAGGAACTCGATCAGTTCTTGTCGCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGCGGTTTAGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTTATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCAGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCCTCAACTTCCACTGTCTTGAAGAGCAAGCGCAAAAGTTCGTCTCTGCGCTCAATCATGGTGCATGGCAAGGGATTTAAGTAA 1299 0.5258 MAYHNPQDLPLHHFTDQQQHHNQTLTHASLLSDPTSKPPSDPHQPAPNWLNNALLRAHYTDTTTTTNNNSNNNNNNSDTNVSAANNGTNFLNLHTAASDSGQWLARPILHRNQSEVIDDVAAAGDSSMAGAGSGDLKSEAAAVEGGSDGLMNWQNARFKAEILAHPMYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSSSLRSIMVHGKGFK 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00752 432 SMART HOX_1 343 408 IPR001356 GO:0003677
Spst9g00752 432 SMART KNOX2_2 209 264 IPR005541 GO:0003677|GO:0005634
Spst9g00752 432 Pfam KNOX2 domain 213 263 IPR005541 GO:0003677|GO:0005634
Spst9g00752 432 SMART ELK_2 321 342 IPR005539 GO:0003677
Spst9g00752 432 FunFam homeobox protein knotted-1-like 3 isoform X1 342 403 - -
Spst9g00752 432 Gene3D - 342 403 - -
Spst9g00752 432 ProSiteProfiles 'Homeobox' domain profile. 341 404 IPR001356 GO:0003677
Spst9g00752 432 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Spst9g00752 432 SMART KNOX1_2 156 200 IPR005540 GO:0003677|GO:0005634
Spst9g00752 432 SUPERFAMILY Homeodomain-like 343 407 IPR009057 -
Spst9g00752 432 CDD homeodomain 344 405 IPR001356 GO:0003677
Spst9g00752 432 MobiDBLite consensus disorder prediction 62 85 - -
Spst9g00752 432 MobiDBLite consensus disorder prediction 264 283 - -
Spst9g00752 432 MobiDBLite consensus disorder prediction 29 49 - -
Spst9g00752 432 ProSiteProfiles ELK domain profile. 321 341 IPR005539 GO:0003677
Spst9g00752 432 Pfam KNOX1 domain 159 199 IPR005540 GO:0003677|GO:0005634
Spst9g00752 432 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 406 - -
Spst9g00752 432 Pfam ELK domain 321 342 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00752 Spst-Chr9 6453955 6457389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00752 1 417 Homeobox Transcription Factor Family AT5G25220 65.342 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst9g00752 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00752 - - pvu:PHAVU_009G090500g 760.755