Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00744 ATGGATCAAGATAGAGTTGAGGTATTGGATCCGGTTCATAATGGGAATTTGATTCATTTGGTTGAAGGAGTTGCAATTGCAAGAGATAGTATAAGTGGAGAAGCTGAAACATCGAGAGAGGTGGATGAGAATTTGGGGTCCGATAAGGAGCTAAAGGAGGAAGTTAAGGGCGAAGACAAGCATGGTCGGGAAAATTCCGGTGATAAATTACCCGGGGTTGATCAGGGAACCAGTTATAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAACTGTGGTTGTGATTGAGTCCGTTCAGACTGAGTACATCAATGAAGATAATAGGAAATTGGAAGTGAAAGATGATGAATTAGGGTTGAGCTTGGTTTCCACTAAAGCACCAAAAGAGGTGTCTGAAATTGATAAAAGTTCGTGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTATATGAGAATTCTGAAGGTGAAACGATTTGTAGGATTTGCCATCTGACTTCTGGTCAGTCTTCGGATGCAACAATTATTGGCACTGCTAATAGTGCTACAAGTGCAGATTTGATTCAGCTTGGTTGTTCGTGTAAAGATGAGCTAGGCATTGCGCACGTTCACTGTGCTGAGGCCTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGTGAGCCTGCAAAAAATGTTTCAGGTGTTACTAGTAATGGATTTATGGAGGAGTGGAATGAAAGAAGATTCATGGACGACGACAGTAACTCATCCCCCAGGGTAGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCGTTTGTTCTGCCATGGTTTTTTCGTGTAAATATATTCTAG 870 0.4172 MDQDRVEVLDPVHNGNLIHLVEGVAIARDSISGEAETSREVDENLGSDKELKEEVKGEDKHGRENSGDKLPGVDQGTSYNSNHLVNQEVIETVVVIESVQTEYINEDNRKLEVKDDELGLSLVSTKAPKEVSEIDKSSCVIDIKCSSHKKLYENSEGETICRICHLTSGQSSDATIIGTANSATSADLIQLGCSCKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVTSNGFMEEWNERRFMDDDSNSSPRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNIF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00744 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 234 IPR013083 -
Spst9g00744 289 PANTHER ZINC FINGER, RING-CH-TYPE 53 289 - -
Spst9g00744 289 MobiDBLite consensus disorder prediction 33 68 - -
Spst9g00744 289 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
Spst9g00744 289 SUPERFAMILY RING/U-box 155 225 - -
Spst9g00744 289 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
Spst9g00744 289 MobiDBLite consensus disorder prediction 31 80 - -
Spst9g00744 289 SMART ringv_2 160 223 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00744 Spst-Chr9 6384330 6386619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00744 141 288 C3H Transcription Factor Family AT5G05830 41.176 4.04e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00744 - - gmx:100776373 462.611