Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00735 ATGGTCAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTGGGAACTTTTGAAACGGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCAAGACTAATGTGTGGCACAAGGGCTAGAACAAACTTCCCTTACAACCCCAATGCACCTCAGTCATCATCTTCGAAACTTCTCTCAGCAACTTTAACTGCAAAACTGCATAAGTGCTACATGGCTTCTTTGCAAATGACAAGACCATCACTACCAGAGCCTCAGAGAGTGGCTTCACCAGATGTCTTCACCTCCACGAGTAACTTCTCCATGAATAGTTATGAAACTAAAACAATGTTGCCACAAAAGAGACAAAAGGAAGAGCATGAAGTAGAGGAGAATTGGGTTTTCAAGAAGGTTAAGGTGGAAAGGGCTCAACAGTTCAAGCCTCTTGAAGAAGACCACATTGAGCAAATGATAGAGGAGTTGCTCTGTGATTCCCCATCACAGGCTCTTTTAATTCATAATACTTATTGA 567 0.4392 MVRSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNAPQSSSSKLLSATLTAKLHKCYMASLQMTRPSLPEPQRVASPDVFTSTSNFSMNSYETKTMLPQKRQKEEHEVEENWVFKKVKVERAQQFKPLEEDHIEQMIEELLCDSPSQALLIHNTY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00735 188 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Spst9g00735 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 - -
Spst9g00735 188 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Spst9g00735 188 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Spst9g00735 188 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Spst9g00735 188 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Spst9g00735 188 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Spst9g00735 188 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Spst9g00735 188 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Spst9g00735 188 FunFam Ethylene-responsive transcription factor 2 6 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00735 Spst-Chr9 6313303 6314063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00735 1 174 AP2-EREBP Transcription Factor Family AT5G25190 65.922 2.44e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g00735 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00735 - - gmx:100804510 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00735 9 6313303 6314063 Spst9g00735 9 6313303 6314063 ECH
Spst8g01508 8 15868925 15869997 Spst9g00735 9 6313303 6314063 PCT