Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00729 ATGCAGACGAAGCAGAAAAAGCCAAAGTGGAGAAAAAAAATTCTCCAAATCAGAGATGCAAAGGGACAGTCTAACAACAACTGGGGACATGTTGCCCTGATTGATGGACTTTCAAGTACGAAGGGAAGTTTGTTTGGTGATGACTTTGGTCTCCATGACAATGTGTCAAGAATCAACATATTAGAATTTCTTAAACTACTACCAATTACAAAGGCACGAAGAAAGTACTCTGCAATGGAAACACTGAGCCACGAGGCTCCCTTCTATGATAACCTTTCTGCTGGAGAGACTCCTCCAAGTCCAACTACACCATTGCAGGATCCACAGGAGAAGAAACAGCTATCTGTTGAGGAAGAAGAAGAGGAAGAAAATGAGGTAAAAGCAAATACTTTATTGGATCTAAATGCCCCTGGTGATGATTCTGCTATTGGGTGCAGTCGAGTGCTGAATCTCATCACGTGTTTGGACACGGATTTGTCATCAGAAAACCCCCATGAGCCACGAGTGTTCTCTTGCAACTACTGCCAGAGAAAGTTTTACAGTTCACAAGCTCTTGGGGGACACCAAAATGCTCACAAAAAAGAGAGGTCAATTGCAAAGAGAGGTCACAGATCAGGATCACGCATGATGGCCTCAGCAACAGCTTTTGGGATTCCCTTTCTCCACAATCACCTTCCTCACTATGCTACCATGGCTTCTCTGCCTCTCCATGGTGCTTGTAGCAATAAACCACTTGGAATTCAGGCTCACTCTATGATTCACAAGCCTCCTCCTCCTTCTTCTCATATTTCATTCAATGGGTTTGGAAACACTTTTGGACAGCTTCATGCGTGGTCAAGACCCCTTATCACCCAACAACCTAGAATAGGGAAGTTAACGATGGAAAGTTGTCACAAAACATCACGAGGCAGCGTTGGGAGATTCGAAGCGGTGAGCACCATGCTCAATCCAGCAGGTAATGAAGAAGCCAGTGGATATCTGGTTAGTGGAATTACTCGTTTGAAGACTAGTCAAGAAGAAAAGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 1053 0.4416 MQTKQKKPKWRKKILQIRDAKGQSNNNWGHVALIDGLSSTKGSLFGDDFGLHDNVSRINILEFLKLLPITKARRKYSAMETLSHEAPFYDNLSAGETPPSPTTPLQDPQEKKQLSVEEEEEEENEVKANTLLDLNAPGDDSAIGCSRVLNLITCLDTDLSSENPHEPRVFSCNYCQRKFYSSQALGGHQNAHKKERSIAKRGHRSGSRMMASATAFGIPFLHNHLPHYATMASLPLHGACSNKPLGIQAHSMIHKPPPPSSHISFNGFGNTFGQLHAWSRPLITQQPRIGKLTMESCHKTSRGSVGRFEAVSTMLNPAGNEEASGYLVSGITRLKTSQEEKKHLDLSLKL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00729 350 MobiDBLite consensus disorder prediction 186 206 - -
Spst9g00729 350 MobiDBLite consensus disorder prediction 89 126 - -
Spst9g00729 350 Coils Coil 109 129 - -
Spst9g00729 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Spst9g00729 350 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 102 350 IPR044246 GO:0009788
Spst9g00729 350 MobiDBLite consensus disorder prediction 95 110 - -
Spst9g00729 350 Gene3D Classic Zinc Finger 155 216 - -
Spst9g00729 350 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Spst9g00729 350 SUPERFAMILY beta-beta-alpha zinc fingers 167 197 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00729 Spst-Chr9 6267579 6269503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00729 100 350 C2H2 Transcription Factor Family AT5G10970 40.072 1.33e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst9g00729 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00729 - - gmx:100783199 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01503 8 15707147 15708013 Spst9g00729 9 6267579 6269503 PCT