Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00728 ATGACTGTCGAAAAGAGTTTCCCGTCGGGAATGAGTGATTCTGGGGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGACGATCCCATCTGCCTCATGGTCTTGGAAAATCTCCTCCGGAAATGTCAATATCATGTAACCACAACAAATCAAGCAATAACAGCATTGGCGCTGTTGAGAGAGCATAAAGACAAGTTTGACCTGGTAATTAGTGATGTGCATATGCCTGACATGGATGGATTTAAGCTGCTTGAGCTGGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAGGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAACATGTAATCAGAAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACAAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCATCTGGAGCCGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGATGATGAAGATGAGGAGCAGGAGATTGATCATGATAATGATGACCCTTCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGATAAGGCTGTACCTAAAAAAATTCTGGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGTGTGCAGATCCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTTGGACATTTACAAACATTGAGTGGTTCTGGACAGCTTCATAACAATGGTTTTAGATCCTTTCCACCAGGTGGAATAATTAATAGATTGAACACTCCTGCTGCTTTGAATGCGCATGGGTTTCCTTCTGGAGTTCTTCAGTTGAGTCAATCACAAAATTTAAACAACACTAATGATCATCTTAAGTTCCAGTCAGCCATGGTTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCAATGTCTGCTCAAAACAATAAGGGTGTTATTTCTGTTCAAAATCTAACCACTGTTTTTAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAATAACCACCTCTAGCTCGCAAAATCCAGATGTAGGTATGTCAAACAATGCCTTGATGTTGGAACCATACCCTCAAGGAACACAAGGGAGTGTAAGAATTGAAACTTTATCTTCTTCAGTAGCCTCTCAACATTCAGATTATTCTTTACCTTTGCTGGATCAAGGTAGATATAGTGATAATAGTTGGACAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTCTTACCCTTCAAGTGAATGTTTTAGACAGACTAATATACCTCCTCCAGATAACATGGCTTCTGTACCCTTACAAGGTGGTAATCTGAGTGGTCCATCTATCACTTCACTGTCCAGGCAATCCCATGATTCAATGACAAATATGCACTCTGAAGGAGTGACTTTTACTAACAGATCTGGGCTCATAAGCAGTAATGTGCCATTTCAAGGATGGGATGACCGTAATCAGGATGCTACTCACCATTCAAATAATATATTTGCATCAATAAACTCATTGACTCCAGTCAATGGTGCTACTGTTCCAGCAGGCCATACAGCAACAAACTCAGCCTCCCAGAGAAACTTGGACTTTAACTTTGGTGATCCCTTACAAATGAAGCATGATGGGTTTGTGGAATTTACTGAAGAGATCTCATCTAAGCAACATCAGGGGAATATCTTGAACCAGCAGAAGTCACAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAAAAAGATAAGCTGAAATTATTGGATGGAAACCTCATTTGCGATAATTACTCTGGTGGATTATCTATGTGA 2049 0.4168 MTVEKSFPSGMSDSGEEFPVGMRVLAVDDDPICLMVLENLLRKCQYHVTTTNQAITALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDDDEDEEQEIDHDNDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGCADPSYLRMSSVSGVGHLQTLSGSGQLHNNGFRSFPPGGIINRLNTPAALNAHGFPSGVLQLSQSQNLNNTNDHLKFQSAMVPVNQNGVQGMPMSAQNNKGVISVQNLTTVFNAKTNFPISNKLPDPRPKITTSSSQNPDVGMSNNALMLEPYPQGTQGSVRIETLSSSVASQHSDYSLPLLDQGRYSDNSWTSAVQPSVIQTNSYPSSECFRQTNIPPPDNMASVPLQGGNLSGPSITSLSRQSHDSMTNMHSEGVTFTNRSGLISSNVPFQGWDDRNQDATHHSNNIFASINSLTPVNGATVPAGHTATNSASQRNLDFNFGDPLQMKHDGFVEFTEEISSKQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDKLKLLDGNLICDNYSGGLSM 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00728 682 Gene3D - 204 267 - -
Spst9g00728 682 Pfam Myb-like DNA-binding domain 210 260 IPR001005 -
Spst9g00728 682 SUPERFAMILY Homeodomain-like 205 265 IPR009057 -
Spst9g00728 682 CDD REC_typeB_ARR-like 24 138 - -
Spst9g00728 682 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Spst9g00728 682 SUPERFAMILY CheY-like 21 145 IPR011006 -
Spst9g00728 682 MobiDBLite consensus disorder prediction 155 175 - -
Spst9g00728 682 PIRSF RR_ARR_type-B 4 679 IPR017053 GO:0003677|GO:0003700|GO:0009736
Spst9g00728 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 264 IPR017930 -
Spst9g00728 682 MobiDBLite consensus disorder prediction 408 422 - -
Spst9g00728 682 MobiDBLite consensus disorder prediction 145 208 - -
Spst9g00728 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 395 IPR045279 GO:0009736
Spst9g00728 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677
Spst9g00728 682 MobiDBLite consensus disorder prediction 401 422 - -
Spst9g00728 682 Gene3D - 21 157 - -
Spst9g00728 682 FunFam Two-component response regulator 204 267 - -
Spst9g00728 682 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Spst9g00728 682 SMART REC_2 22 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00728 Spst-Chr9 6233679 6237638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00728 1 453 Response Regulator Gene Family AT2G25180 51.464 6.74e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst9g00728 Response_reg 4.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00728 - K14491 gmx:100809002 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00728 9 6233679 6237638 Spst9g00728 9 6233679 6237638 ECH
Spst8g01500 8 15642260 15653007 Spst9g00728 9 6233679 6237638 PCT