Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00727 ATGAGTAGTTTGGTGGAGAGACTTCGTGTGAGATCAGATCGAAGGCCAGTTTATAATCTTGACGAGTCAGACGATGATGCTGATTTTTTGCCAAGAAAGTCTGGGACAACTCAGGAAAAGTTAGAGAGGATAGTGAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGAGAAAATGAAAATCTTGTGAGCTGTGAAACTTGCACATATGCATACCATCCTAGATGTTTACTTCCACCTCTTAAAGGCCCCCTTCCAGACAATTGGAGATGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACAAAGTTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTCGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTTTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTGTCAATACTTCTGACGATGATTTTGTTGCCATTCGACCCGAATGGACTACAGTTGACCGAATACTTTCTTGCAGGGGTGATGATGATGAGAGGGAGTATCTTGTGAAGTGGAAGGAGCTTCCGTATGATGAATGCTACTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGACTTCGGTCTAGATCCAGTAAATTTTCTTCCAGTAAACAAAAACACAGTGTTAAGGATGAAACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTTTGAACATAGCCCTGAGTTTCTTTCAGGTGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACTATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGGGTGTCTCCCCACATCTTGTGGTTGCTCCACTTTCAACTCTGCGAAATTGGGAACGGGAATTTGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTATTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGACAGGATTAAATTTGATGTTCTTTTGACATCGTATGAGATGATCAACTTTGACACTACATCACTAAAACCTATAAAATGGGAGTGTATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCACTGAAGCAATATTCTAGTAGGCATCGTGTTCTCTTGACAGGAACTCCTCTTCAGCATCTGCCTCTACCCATTGCTTTGTGCCTCCTCCCACAGTGCTGCCTCTACCTCAACCTAGAGATGGTTCCCCTTGCCTCTATTGAGTATTCTTTTAGTAGTTGGGTGCAATGGCTCAAAGATAAAGAGGGGAATCGATGCCACTTTCTTTGTACTGGTTATTTTGAACTTTACATGGTTGTTGGTGTTTCAAACAACTTGGATGAGCTTTTCATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCTCCACATCTATTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCCAAAAAGGAACTTATTCTACGCGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGCGGAAGCTTTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGATGATGCAAAAGAAGCATACAAACAGCTACTTGAATCGTCAGGGAAGTTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACATAGAGTACTTATATATTCCCAATTTCAGCACATGCTGGACTTACTTGAAGATTATTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGTTTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTGGGGATAAACCTTGCAACTGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATCGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTGGGAAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGATATCATAAGATATGGATCGAAGGAGTTATTTGCAGATGAGAATGATGAAGCCGGCAAATCCCGCCAGATCCATTATGATGCTGCTGCTATTGACAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACGTTGGATGATGAGGAAGAAGATGGATTTCTGAAAGCGTTCAAGAATTTGCGATCATTGATGCAATGCTATTCTGCTGCTGTTGTTGCATCTTACGTAAATTCAGAAGAACTAATATTCCTAATGGTTGCAAATTTTGAGTATGTTGACGAAGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAGGCCCTAAACAGTTCAGAAAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGAAAAGGGAAGCGAAACCGGAAGCTGGACCTAGAGCTTGTGAAGGATGTCTTGCTAACTTTACCAAGTGGAATAAGGGGGAAGATGGTTTCTGTGGAGGAGGATGACCTTGCTGGTCTAGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAACTTACTGATGGTGATTCAAATTCAAATGGAACTGGAACTACTACAGCTAAAAGGCCTTATAAAAGAAAAGCCCGTACTGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAATCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGACTGGAAGGAGTTTACTTCCCGCTTGAAACAGAAGACTTATGAAGAAATCAAAGACTATGGAACCCTTTTCTTGTCCCATATTGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTACCAAAAGAAGGATTACGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTTTTGATAAGGGACAAGGTGAAGTTTGCGTCACAACATCCTCAGACTCCATTATTTTCGGATGACATCTTATTACGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTTCCGTTTTGAAGCACGGGTATGGAAGATGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTCGGTTCTCAGGCACAAAATGGTGCAAATTTGACAAATGCAGAAGTACCTAACAGTCAATCCAGGGAAAATGGAGGGAGTGATATACCAGCTGATGGTGCGCAAGGTTCTGGTGATGCCAGGAACCAAGCACAATTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTCAATGCCGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGAAGTAACAAATGAGGAACTTAAAAGTGAAACCAAGGCTACCAATTTTCCAAGTTATAAATTAGGGGAAACTGACACCCAAATGACTGATCAACTGCCGAAAGTAGAAACAATTGCTTCAGAAGAAATTTCGGCTGCTTGTGATGGTGATCCAAATCGATTGGAGTTAGTTCGTCTTTATAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGATCCTGATGTAGTCAAGAATTTCCCACCGCTAGTAACCATTTGCGAAGACATCTACAGAATTCTAACACCCATACAAGAACAACGTGCTGCAGATATTCCAATATCAAATTTAGACAACAAATCAGAGGCTATATCGGACGGTGAGATTTTGGGCACCAAATCATTGGCAAACCATCGAGATGCTGGTAAACCTACAGACTCAGCAAACAATGAGAACAAAGACATGATAATAGAATCTGAACCTATAAAAGATAAGAATGAAGCAACGACTCTGCCGGAGAAAGAGAAAAGTAATACAGAAATGGATGAAACTATGGCTGATGCTGAGTAG 4596 0.404 MSSLVERLRVRSDRRPVYNLDESDDDADFLPRKSGTTQEKLERIVRSDAKEDLCQACGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDDDFVAIRPEWTTVDRILSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSSKQKHSVKDETELKKQQKEFQHFEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQHLPLPIALCLLPQCCLYLNLEMVPLASIEYSFSSWVQWLKDKEGNRCHFLCTGYFELYMVVGVSNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKNLRSLMQCYSAAVVASYVNSEELIFLMVANFEYVDEAEAAAEEAAQKRAMEALNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLDLELVKDVLLTLPSGIRGKMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSNGTGTTTAKRPYKRKARTDSTEPLPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRLKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGANLTNAEVPNSQSRENGGSDIPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNEVTNEELKSETKATNFPSYKLGETDTQMTDQLPKVETIASEEISAACDGDPNRLELVRLYNEMCKVVEENPMDLVQTSLAREPADPDVVKNFPPLVTICEDIYRILTPIQEQRAADIPISNLDNKSEAISDGEILGTKSLANHRDAGKPTDSANNENKDMIIESEPIKDKNEATTLPEKEKSNTEMDETMADAE 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00727 1531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 676 837 IPR001650 -
Spst9g00727 1531 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 1495 - -
Spst9g00727 1531 Pfam SNF2-related domain 531 650 IPR000330 GO:0005524|GO:0140658
Spst9g00727 1531 Gene3D - 189 241 - -
Spst9g00727 1531 MobiDBLite consensus disorder prediction 1498 1525 - -
Spst9g00727 1531 CDD CD2_tandem 190 239 - -
Spst9g00727 1531 Gene3D - 589 887 IPR027417 -
Spst9g00727 1531 Coils Coil 1513 1531 - -
Spst9g00727 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 583 IPR027417 -
Spst9g00727 1531 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Spst9g00727 1531 SMART PHD_3 53 96 IPR001965 -
Spst9g00727 1531 CDD CD1_tandem 98 171 - -
Spst9g00727 1531 Gene3D - 1148 1326 - -
Spst9g00727 1531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Spst9g00727 1531 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Spst9g00727 1531 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Spst9g00727 1531 Gene3D - 252 470 IPR038718 -
Spst9g00727 1531 SMART chromo_7 99 162 IPR000953 -
Spst9g00727 1531 SMART chromo_7 190 244 IPR000953 -
Spst9g00727 1531 Gene3D - 98 188 - -
Spst9g00727 1531 SMART DUF1087_2 930 1015 IPR009463 -
Spst9g00727 1531 SMART ultradead3 282 499 IPR014001 -
Spst9g00727 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 841 IPR027417 -
Spst9g00727 1531 SMART helicmild6 702 786 IPR001650 -
Spst9g00727 1531 SMART DUF1086_2 1025 1181 IPR009462 GO:0003677|GO:0006338
Spst9g00727 1531 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Spst9g00727 1531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Spst9g00727 1531 MobiDBLite consensus disorder prediction 1476 1531 - -
Spst9g00727 1531 Pfam PHD-finger 54 96 IPR019787 -
Spst9g00727 1531 Pfam Helicase conserved C-terminal domain 673 786 IPR001650 -
Spst9g00727 1531 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Spst9g00727 1531 CDD SF2_C_SNF 671 797 - -
Spst9g00727 1531 MobiDBLite consensus disorder prediction 1033 1047 - -
Spst9g00727 1531 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Spst9g00727 1531 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Spst9g00727 1531 MobiDBLite consensus disorder prediction 1014 1066 - -
Spst9g00727 1531 MobiDBLite consensus disorder prediction 1258 1284 - -
Spst9g00727 1531 Pfam CHD subfamily II, DUF1087 935 984 IPR009463 -
Spst9g00727 1531 Gene3D - 520 584 IPR038718 -
Spst9g00727 1531 MobiDBLite consensus disorder prediction 1014 1032 - -
Spst9g00727 1531 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Spst9g00727 1531 Pfam SNF2-related domain 306 469 IPR000330 GO:0005524|GO:0140658
Spst9g00727 1531 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Spst9g00727 1531 Pfam CHD subfamily II, SANT-like domain 1045 1178 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00727 Spst-Chr9 6214746 6232494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00727 665 837 RAD5 or RAD16-like Gene Family AT5G22750 32.948 1.95e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst9g00727 SNF2_N 1.1e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00727 K11643 - gmx:100804203 2405.17