Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00687 ATGGCTTCCAAGCTCTGCGACTCTTGCAAATCCGCCACCGCAACCTTGTACTGCCGCCCTGACGCCGCCTTCCTCTGCGGCGCCTGCGACTCCAAGGTTCACGCTGCCAACAAGCTCGCCTCCCGCCACCCGCGCGTCGCGCTCTGCGAGGTCTGCGAACAGGCGCCTGCGCATGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGCGACATCCACTCCGCTAACCCCCTCGCCAGCCGCCACGAGCGCCTTCCTGTCACGCCCTTCTACGAGTCTGTACACTCCGTCAAGGCATCCTCGCCGATCAACTTCCTCGACGACCACCGCTTCTTCTCCGACGCTGACGCTGACGTCAGCACCGAGGAGGCCGAGGCTGCCTCCTGGTTGTTACCTACTCCGAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCGGAATCCGAACCCGTTCCGTACATAGATCTGGACTATTCCGCCGCGGATCCGAAAGCGGAGCAGAAGAACTCCGCCAACGCCGACGGCGTAGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAACTCCACTCTCTCACAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCGGCGGTGACAGTAACGGCGCAGTTTTCGGCGGCAGATAGGGAGGCGAGAGTGTTGAGGTACAGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACTATTCGCTACGCATCGAGAAAAGCATACGCGGAAACGAGACCAAGGATCAAAGGCAGGTTCGCCAAACGTGCTGACGCAGATCCTCTGTCTGGATACGGCGTTGTTCCGTCGTGTTAA 930 0.5892 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVTPFYESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPTPKTDLNSSQYLFSESEPVPYIDLDYSAADPKAEQKNSANADGVVPVQSNYEPFAYGYKYNSTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRADADPLSGYGVVPSC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00687 309 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Spst9g00687 309 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Spst9g00687 309 CDD Bbox1_BBX-like 5 48 - -
Spst9g00687 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 297 IPR045281 GO:0009909
Spst9g00687 309 SMART bboxneu5 49 91 IPR000315 GO:0008270
Spst9g00687 309 SMART bboxneu5 1 48 IPR000315 GO:0008270
Spst9g00687 309 Pfam CCT motif 252 294 IPR010402 GO:0005515
Spst9g00687 309 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Spst9g00687 309 ProSiteProfiles CCT domain profile. 252 294 IPR010402 GO:0005515
Spst9g00687 309 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00687 Spst-Chr9 5929433 5930482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00687 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 52.926 2.42e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst9g00687 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00687 - - gmx:100794431 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00687 9 5929433 5930482 Spst9g00687 9 5929433 5930482 ECH