Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00681 ATGGAGAATGATTGTATAGAAGACATGGACATCGAGGCCCTTCCTTCAATGTGGCCTGAAGATATAGGAACTGAGGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATTGAGCTCACAAAGTTTACAGAAAAGGGGTCTTCTCAGTTGGCATGCCTAATGAAACAATGGGAGTACAAGCAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAGCTCGACAACCTAAGCAAACAAAGGCAGGATGTTGAGCTCAGGAAATTAGAGATATTGGAAGAACATCGATTTGAGGAAGACAGATATGGTGGTGACAAACGCCCAGTTTCTATATTGGATGACGTTTATGATGGTATGTGGCAAGATATACCTTGCAGGAAAAGTGATGCTGTGGTTCAAAACAAGAGGAATGAGATTGATGCTGAGTATGATACTGTCATCTACTGGAAACAGCGAGCCTTGCATTTAGAGAAGCACCTGGAGGCAAGTATCCAAAGGGAACATATACTTGAAGAAAAGTTGCAAGAAAGTATAGCAAAAATTGAAAGGCAGTCCTCACCTGTGGAAGAACTGTCCCAGATCCTGAAAAGGGCCGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGATTTGCGCTATTGCTTTATATACAACCATTTTCCAAGTTTACAAGAAGAGCTGCTGAAAACTGAGAAGAAGCTTGTTGACATCATAGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTAATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAACTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCATATTACAGGTTCAATTACTTATATCAAATTTACTTCAATTTGTTCTTGCAGCAAGAAAGCTTATCATGTTCCCGTCCTCCTTTTAATAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTCTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTCGAGTCAGGAGTCATGAAGTTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACTGCTGCAGTTTCATTGCAAAAAGTATTAACCTTAGAAGGACATGTAGCTGATGATGTACCTATTGAGGTTGTTGGTGATGTTTTAAGGATGCGGCAACTTCTCACCAATTTAATTAGTAATGCCGTTAAGTTCACTCATGAAGGCAAAATTGGAATAAACCTTTACGTTGTGCCAGAGCCTACTTTTGCGAAGGAAGATTGCATCCAAAAGATGACTTCGAACCATTCGACTATTATAGTGAATGGTGTGAAAGAAGACAAATATCTATCAACGCCTCAAAGTGGTTGTCAAAAACATGATGATTATCCCAGCCAAAACCATGCATTCAATGATGAATGTAGATCACCGGTCAAAAGTGAATGCTCTGTGAATGGAGACACCGAGGAACAACATCATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATTGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCGTCTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACTTTCATACTCCCATACCAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGACGTGGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAGCCACGCACTTTGGGGTCTCTATTATCTTCTAATGGATCTAGCAGGACACAGATGTTATTACCACACAAAATTGGCTACACAAGCACCCATAAACTTGGTGGATTTTCCGAGAGTTTATATTCAATCCTCTCCAATGATATCATGTCGAAAGAGATATGCTCAGTTGATGATTCATTGTCAGCGGTTGATGCTCCAGATATGTCTGAATCGGCCAGCTCATCAGGTCACAGCTCAGAAACAAAGAACATAAGTTTAGTTAGCAGAGAGAAACTGCAGCAAGATAAGGCTCATACTTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCTTGTGGAGAAATGGTTGTAGCAACAAAGTCATGTGAACTCCCACAACCATGTCAAGGTCGTGCGAAGACAAACACAACTATCCAAAGTGTCACAAGCAACAGTACATCAGTAGTAACCAAATCCACATCAAGGCCTAAGATCCTTCTAGTTGAAGATAACAAGATTAACATCATGGTAACACAGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACTTGCAGTTCAGCGCTGCACTTTTGACCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTCGAGGAAACAGGCAAGTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTCTACCAGATTCAGATTATGAATGTTGTAAACCATCTACAAAGCGGATTCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGCGCTGAAGAGTGTTTTGCAAATGGAATGGACTCGTTTATGTCAAAACCTGTGACTTTCCAAAAACTGAAAGAATGTATTGAACAATACCTAAGTTGA 3129 0.4094 MENDCIEDMDIEALPSMWPEDIGTEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLIELTKFTEKGSSQLACLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEDRYGGDKRPVSILDDVYDGMWQDIPCRKSDAVVQNKRNEIDAEYDTVIYWKQRALHLEKHLEASIQREHILEEKLQESIAKIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEELLKTEKKLVDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITGSITYIKFTSICSCSKKAYHVPVLLLIEETMRAKQMLATMSHEIRSPLSGVLSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVADDVPIEVVGDVLRMRQLLTNLISNAVKFTHEGKIGINLYVVPEPTFAKEDCIQKMTSNHSTIIVNGVKEDKYLSTPQSGCQKHDDYPSQNHAFNDECRSPVKSECSVNGDTEEQHHSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHHGSTFTFILPYQVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLLSSNGSSRTQMLLPHKIGYTSTHKLGGFSESLYSILSNDIMSKEICSVDDSLSAVDAPDMSESASSSGHSSETKNISLVSREKLQQDKAHTWSLNGYADSSEATVACGEMVVATKSCELPQPCQGRAKTNTTIQSVTSNSTSVVTKSTSRPKILLVEDNKINIMVTQSMMKQLGHSIDVVNNGVEAVLAVQRCTFDLVLMDVCMPVMNGLQATKLIRSFEETGKWDAARNAGIEQSLPDSDYECCKPSTKRIPIVAMTANALSESAEECFANGMDSFMSKPVTFQKLKECIEQYLS 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00681 1042 FunFam Putative histidine kinase 5 394 469 - -
Spst9g00681 1042 Gene3D - 890 1042 - -
Spst9g00681 1042 Gene3D - 468 708 IPR036890 -
Spst9g00681 1042 Pfam His Kinase A (phospho-acceptor) domain 406 469 IPR003661 GO:0000155|GO:0007165
Spst9g00681 1042 CDD REC_hyHK_CKI1_RcsC-like 899 1037 - -
Spst9g00681 1042 ProSiteProfiles Response regulatory domain profile. 898 1041 IPR001789 GO:0000160
Spst9g00681 1042 ProSiteProfiles Histidine kinase domain profile. 411 705 IPR005467 -
Spst9g00681 1042 CDD HisKA 403 465 IPR003661 GO:0000155|GO:0007165
Spst9g00681 1042 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 703 IPR003594 -
Spst9g00681 1042 Gene3D - 397 467 - -
Spst9g00681 1042 Gene3D PAS domain 209 354 - -
Spst9g00681 1042 FunFam Probable histidine kinase 1 598 708 - -
Spst9g00681 1042 FunFam Histidine kinase 5 891 1042 - -
Spst9g00681 1042 SUPERFAMILY CheY-like 895 1042 IPR011006 -
Spst9g00681 1042 Coils Coil 88 115 - -
Spst9g00681 1042 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 458 703 IPR036890 -
Spst9g00681 1042 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 28 1041 - -
Spst9g00681 1042 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 404 469 IPR036097 GO:0000155|GO:0007165
Spst9g00681 1042 CDD HATPase_EvgS-ArcB-TorS-like 520 702 - -
Spst9g00681 1042 Pfam Response regulator receiver domain 899 967 IPR001789 GO:0000160
Spst9g00681 1042 SMART REC_2 897 1037 IPR001789 GO:0000160
Spst9g00681 1042 FunFam Histidine kinase 5 210 354 - -
Spst9g00681 1042 PRINTS Bacterial sensor protein C-terminal signature 630 644 IPR004358 GO:0016310|GO:0016772
Spst9g00681 1042 PRINTS Bacterial sensor protein C-terminal signature 665 683 IPR004358 GO:0016310|GO:0016772
Spst9g00681 1042 PRINTS Bacterial sensor protein C-terminal signature 689 702 IPR004358 GO:0016310|GO:0016772
Spst9g00681 1042 SMART HisKA_10 404 469 IPR003661 GO:0000155|GO:0007165
Spst9g00681 1042 SMART HKATPase_4 515 705 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00681 Spst-Chr9 5902886 5907700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00681 1 1041 Histidine Kinase Gene Family AT5G10720 55.641 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst9g00681 HATPase_c 6.1e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00681 - - gmx:100819520 1676.76