Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00674 ATGGACATGGAGAAGAATGCCATGGATGGTGCTCCTGACTGTAAGACTCTTCACACCTCCGTATCTTCTTGTGTTAATGATAATAACAACAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTTCCCAATAGCCGTGAACGCATATGGCTAGGGTCTTATGACTCTCCTGAAAAGGCAGCACGAGCCTTCGATGCTGCCCTTTACTGTCTACGTGGTCGCCATGCCAATTTCAACTTCTCCGACACTCCTTGCAACATGGACACCAATGTGGCTGTGGCTGTGGCTGTGGCTGCTCACCAATCTCTTACCGCACCGGAGATTCAAGAGGTTGCTGCCAAGTTTGCAAACGAGGACCCACTACTACTAAAACCTCTTAATCAAGAATCTCAACGTGGTGGTGGCGATGGTGCTGGTGGGAATTCTTCGGACAACATAGCAGAGAGTAGTTCTGGTACTTGTACCCCCACCCCCACTGCCTCCTCATGTTCTACTACTATGCATGAATGTGATGGATCGGTGCAAGTGGACCACGGGGATATGGATTGGACATTCTTGCACGAGTTTGATTACTCCAATGAAGTTTTTCCTGTTGGATCCGACTATGATCTCTATTCTGACCTACACAACGTGCACTCAACTTCAGGTGAGTTGTTGTACTCCACTCCACCCCCACCTCCTTTTCAGGGTTCCCAAGACTTGATTGAAGCCGATGAGGATCCTTTTTCTCACCCATCGTTCCTTTGGAATTGGAACTTCTGA 786 0.4796 MDMEKNAMDGAPDCKTLHTSVSSCVNDNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFSDTPCNMDTNVAVAVAVAAHQSLTAPEIQEVAAKFANEDPLLLKPLNQESQRGGGDGAGGNSSDNIAESSSGTCTPTPTASSCSTTMHECDGSVQVDHGDMDWTFLHEFDYSNEVFPVGSDYDLYSDLHNVHSTSGELLYSTPPPPPFQGSQDLIEADEDPFSHPSFLWNWNF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00674 261 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Spst9g00674 261 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Spst9g00674 261 MobiDBLite consensus disorder prediction 142 174 - -
Spst9g00674 261 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Spst9g00674 261 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Spst9g00674 261 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Spst9g00674 261 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Spst9g00674 261 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Spst9g00674 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 163 - -
Spst9g00674 261 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Spst9g00674 261 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Spst9g00674 261 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00674 Spst-Chr9 5853165 5853950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00674 33 215 AP2-EREBP Transcription Factor Family AT1G74930 43.716 9.33e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst9g00674 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00674 - - vra:106760431 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00674 9 5853165 5853950 Spst9g00674 9 5853165 5853950 ECH