Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00670 ATGGGTGGTGATGGTAGAGTTGAAGTTGTAAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCGTTGGAGCCAATGTCTCCCATTTCGTCCTCTGTGCAACTGCCATCATCAACTGCTCCTTTTGCTAGGCTTGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGTACAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGGCTTTTTGTCGTCACACTGGGTTGGTTCGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGCAGAGTTACGGGGATAACAACATGAACATGGAGGATTTTAGACTGCTTCCTGAGTGTACAAATGCTGAAAATCATTGTCTTCCTGCAAGAATCCACCAAGCCAAGAAAGCTAATAGTGTTGAGGAAATTCAAAGATTCTCTGTGAGAGAGTCTATCAGAAATTCGGACTCAACTTTGTCTGGGTGCTCCATCTATGTTGATCCAAGCATTTCAACTGAGTTGCGGAACAAGGTTACTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAGCAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAATAACCTCATCACACCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTACGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACGTTGAAAATGGCATTTCTAGAAAGGAAGTAGTAAAGCAAAAAGTCTCTGACATTCCTGTGGATATTGAAAGTGAAGTTGGCTATGAAGAAAGACAACAAATTGTGAACTGTGCAAAAATTGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCTGACCCAACTTCAACCGCTTCCATCTACACAGACTCTTTTAGCGTTGAAGATCCTAGTGAAAATCACACTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCCTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGCTGATATTCAAAAACCATTTCCTTTCCATACTCTTCCCAATTGACCGATTCGGCGAGATGGGTCCTTCATCAAGAACGTTTTTCAGTCATAATGGTTTTACGTGTCTTCAGGTGCTGGATCATATCCATGGATTTTATCAGGAGAACATGTCAAGGCAGGAAATAGAAGTTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTCGATCAGTGTACTCAAGTAAGGAAACAACAGAACGTGGCTATGTAATGTTCAAAAGGGTTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGAAAACAACTCCAACGTGTATGAGCTATTACTTAGGGCCTAA 1617 0.4267 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPISSSVQLPSSTAPFARLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVYSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESHYRVQSYGDNNMNMEDFRLLPECTNAENHCLPARIHQAKKANSVEEIQRFSVRESIRNSDSTLSGCSIYVDPSISTELRNKVTETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSNNLITPLWILKTAKEKYVRRLVHMSVDLAKQVGLMLEDVENGISRKEVVKQKVSDIPVDIESEVGYEERQQIVNCAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISDPTSTASIYTDSFSVEDPSENHTSIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLSILFPIDRFGEMGPSSRTFFSHNGFTCLQVLDHIHGFYQENMSRQEIEVAIHSDSRHADRLRSVYSSKETTERGYVMFKRVEFLGSRTSFEMLKRVTGENNSNVYELLLRA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00670 538 CDD BRCT_TopBP1_rpt2_like 50 127 - -
Spst9g00670 538 Pfam twin BRCT domain 54 119 IPR001357 -
Spst9g00670 538 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 538 - -
Spst9g00670 538 Pfam Family of unknown function (DUF6699) 362 522 IPR046522 -
Spst9g00670 538 SUPERFAMILY BRCT domain 48 138 IPR036420 -
Spst9g00670 538 SMART BRCT_7 193 269 IPR001357 -
Spst9g00670 538 SMART BRCT_7 48 127 IPR001357 -
Spst9g00670 538 ProSiteProfiles BRCT domain profile. 46 137 IPR001357 -
Spst9g00670 538 ProSiteProfiles BRCT domain profile. 191 269 IPR001357 -
Spst9g00670 538 Gene3D BRCT domain 49 139 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00670 43 137 Core DNA Replication Machinery Family AT1G77320 36.458 3.62e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00670 - - gmx:100815253 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00670 9 5817341 5822098 Spst9g00670 9 5817341 5822098 ECH