Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00669 ATGAATTTCAAGATTGATTCTTTAGACCAGGAACAAAATAAAAAACGGAAGCAACCTGATGCTGATTATTCTTCGTCTCTGGAATTATCTAATTTCAGTCTGAATCCCAGGAGGTATCAGATAGAGGTGTTTGAAGTTGCATGGAGAAGGAACACAATAGCTGTGTTAGACACAGGCTCTGGTAAAACCTTGATTGCTGTGATGCTTATGAAAGAGGTTGGTCAAACCATCAAGACTATTGGAGTGAAGAAGCTTATTGTTTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGGCATTCAGTTTACTTCTTGGTAAAACTTATTTGTTGTTTTTGTCAAATTTGCAGCAATTTAAGAATATAAAATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAAACGTGGGAGAAGGAGATTAGTAACAATGATGTATGTATTGGTTATGACACCCCAGATTCTGTTGGATGCCTTAAGAAAAGCATTCCTACGTATGGAAATGATATGCTTGATTGTGTTTCTTCTTCAATGGATTGTGAGGATCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACCATTGAAGATCGGACAGAGATGGATAGATATATCTCGTCTGCTCAAGAGAGTTGTAAATATTATGACCAAGCACGATTTTCTGCTTTGAGTTTGAAGCCAAAGATTGAAGCCTTGTGGTTCAAGTTTGATGCATCATTGTCAGAAACTAAAAGTAACTATACGGACGTGGACAATAAATTTAAGACACTGTCTCAGCGGATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGCAATATGTTGCAAAGCCAAAATGTTCTGATAACAAGATTTTGGGAGTTGATTTTGATTATTGGAAGGCAGAAGATTTGGGATACATATCTCCAAAATTACTTGAACTTATTAAAATCTTTGAATCACTTGGGTATGGAGCTATGATCTACTGTTTGGGTCACATAAATAGTTTTCCTCTGAAAGTGTTGTGCCTTATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAAAAAGTTCCCCAGATTTCTCATTTCACAGTTTCCTATTTAACTGGAAACAATACCTCGGTTGATGCTGTGGCTCCTAAAAAGCAGAAGGAGATATTGGATTCGTTTCGCTCTGGAAAGGTCAATTTATTATTTACTACTGATGTACTTGAGGAAGGGATACATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTTGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGTTAACTCCCAATTTGTCGTCATGTTGGAGAGGCAAGTGGGAAACTTGAAGCAAAGAAATCAACTCTTTGACATTATTAGGAGTGAGCGCTCCATGACTGATGCATCTATAAATAAGGACCATGAATCTAGTTTAAGAGTATTTACCATGGGGAAAATAGATGCATATTATGTGGAATCTACAGGAGCTTCTGTGACTTTAGATTCTAGTGTTAATCTTATCCATCGATACTGTGGAACACTTCCACGAGATCAGTACTCCTCTGCAAAGCCCAGTTATGTGTTTCTGCCTGTGGAAGGGGGTTACCAGTGTAAGTTAACATTGCCATCTAATTCAGCCTTCCAAACAATAATTGGTCCTTCAGGAAAAGATATTCGACTGGCAAGGCATCTTGCTTGCTTTGAAGCTTGTAAGAAGTTGCATAAAATGGGTGCCTTAAATGAACATTTGGTTCCATTTGTTGAAGATCTTTCAGAAGATGACCATATTGTGAAAAATAAAGAATCAAGTTCCGGTGCAGGAACCACGAAAAGAAAGGAGTTACATGGAACAGCCAACATTCGTGCATTAAGTGGTGCATGGGGAGACAAACTTGATGCAGCCACATTTTTTGCCTATAAACTTGAATTCACATGTAGTATTGCTAGCGAAGTATACTCTGGGTTTGTTCTTTTGGTTGAGTCAAAGCTTGATGATGATGTGGGAAATATAGAATTAGATCTTTATTTAGTCTCAAAGATCGTGAAAGTTTCTGTCTCTTCGTGTGGGCCAGTTGATTTGGATGCTACACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGGAGATTGGTGTTTAGGTCAAAATCAGCAAGAGGAGAAACAGAGTTTTTACTTCAGAAAGACACAAAATCATTGTGGAGCACAAAACACTTATATTTGCTTCTACCACTTGAGAAATTGAATGGTATCTGTGCGGTAGCTTTGCACATTAATTGGAATGGAATCAGTTCTTGTGCATCTGCTATTGAATTTTTAAGGAGGAAATTTTCTTTGGTCACTGGAGATTGTGATGATAACAGAAAAATCGCATCACCTCAGGATACCAGTTCATTGGAGATGGAATGTGTAGGAACAAACAAGACTCACTTTGCTAATTGTGTGGTTGATGCTGATAATATAAAAGACACGGTAGTTTTGGCCATTCACACTGGAAAAATATATTGTATTATCGACATCGACAGTAACCTATCTGCAGAAAGTCCTTTCTGTGGAGGAAACAATGAAAAATCCGAGGAACAAATTACCTTTTCAGATTATTTCAGCAAAAGGTATGGTATTACACTGAGACATCCAGGACAGCCTCTTATACTATTAAAGCAAAGTCATAATCCACACAATCTTCTTTTCAACTTCCATGAGGAAGATGCACGAGACCAGTCATCACAAATCGGCCCTACAACCTCCAAAGTGCCGGCACATGTTCACATCCCACCTGAGCTTCTTTATGTTCTTGAATTTAAAAGAACTGTGTTGAAGTCATTTTACTTGTTGCCATCTCTGATGTACCGCATTGAATCTTTAATGTTATCGAGTCAGCTTAGAGAAGAGATATATGGTCAAAGTAGCAAGTCCAACATACATAGCTCACTGATTCTAGAAGCACTTACAACTTTGAGATGTAGTGAAAGCTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTGCCAGACGATCACTAGCAGTTTGTAATTCAACCCTTCATAAACTGGGGACAGATCGCAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGTCGATGGGTTGCTCCAGGACAGCGTTCTATACACCTTGTTTGTTGTGATTGTGGATTGGAAACTCTTGAAGTGCCTTTAGATGTAAAATTTCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCATCGCTGGATGTGTTCTAAGACTATTGCTGACTGCGTCGAAGCTCTGATAGGAGCATATTATGTGGGTGGTGGACTCTTTGCATCACTTAATGTGATGAAATGGCTTGGGATTGGCACTGAACTTGAACTATCCTTGGTTGATGAAGCTATTACTGCTGCCTCTTTGCGTACATGCGTGCCAAAAGAAAGTGAGATTGCAAGTCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCCTACTGGAGGCTATCACTCATTTGTCTGAGAAAGAACTTGGAATTGGCTGCTGTTATGAGAGACTTGAATTTCTTGGTGACTCAGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGATCTGCTTCCGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACATAACCTTCACCAGCACCTTCTACATGGCTCAGGATTATTACTGAACCAGATATCAGAATATGTGAAGGCTATTTCTGAATTAGATCCCAGATCACTTCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGGGCTATGCTAATTGATACTAAGCTCAGTCTTGGCGATGTGTGGGACGTTTTCTATCCTCTATTATCTCCCATAGTTACTCCTGAAAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAACTGTGTGATTCTCTTGGGTATTTTGTAAAAGTAAATGAAAATGGTGAGAAAAAGGGATCCATGGTGCATGTTATGGTTAGTGTGCAGCTGCCAAATGAGCTTTTAGTTCGTGAAGGAAAGGGAGCAAATAAAAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTAAAGGATCTTGAGAAGCGGGGAATTTCGCATTGTAATTTTATTTCCAAGGGAAAAAGAGATAATCCTGACCCTATGAATGATTCATCTCATCTCAAAATGGATTCTAGTGCTTGTTTTACTCAAATCGAAGAACATTCCTCAGAACCAGTATCACATAAAAGGAAGAAATTGGATGAAACTAACCCAACTGATAGTATTTTGCCTCTCAAGGACTTTTCCAGTGACGACCCTGGTTTTAGTGCTTCGATTCCAGTTAATTTATCAATTAATATGAAGAAGGGAGGACCACGGACCACACTATATGAAGTGTGTAGGAAACTACAGTGGCCAGTACCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGGCCTGCAAGGAAGCAAGGGACTGAACTGTTTTGTGTCAAAAATTACCCTGTGCATACCCAACTATGGAAATATAGATTGCAAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTTGACTCTGCTGCAGTTAACATGCTCTTTGAGCTGCAAAAACTAGGAAAAGTTGAAATTGATCCTCCCCCTTCTAGTTAG 4881 0.3876 MNFKIDSLDQEQNKKRKQPDADYSSSLELSNFSLNPRRYQIEVFEVAWRRNTIAVLDTGSGKTLIAVMLMKEVGQTIKTIGVKKLIVFLAPTVHLVNQAFSLLLGKTYLLFLSNLQQFKNIKYLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVCIGYDTPDSVGCLKKSIPTYGNDMLDCVSSSMDCEDQISELESILDSQRYTIEDRTEMDRYISSAQESCKYYDQARFSALSLKPKIEALWFKFDASLSETKSNYTDVDNKFKTLSQRMSNELGKILHCLEDLGILCAYEQYVAKPKCSDNKILGVDFDYWKAEDLGYISPKLLELIKIFESLGYGAMIYCLGHINSFPLKVLCLIFVERIITAKVIERFAKKVPQISHFTVSYLTGNNTSVDAVAPKKQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQVNSQFVVMLERQVGNLKQRNQLFDIIRSERSMTDASINKDHESSLRVFTMGKIDAYYVESTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPSYVFLPVEGGYQCKLTLPSNSAFQTIIGPSGKDIRLARHLACFEACKKLHKMGALNEHLVPFVEDLSEDDHIVKNKESSSGAGTTKRKELHGTANIRALSGAWGDKLDAATFFAYKLEFTCSIASEVYSGFVLLVESKLDDDVGNIELDLYLVSKIVKVSVSSCGPVDLDATQMMKAKCFHELFFNGLFGRLVFRSKSARGETEFLLQKDTKSLWSTKHLYLLLPLEKLNGICAVALHINWNGISSCASAIEFLRRKFSLVTGDCDDNRKIASPQDTSSLEMECVGTNKTHFANCVVDADNIKDTVVLAIHTGKIYCIIDIDSNLSAESPFCGGNNEKSEEQITFSDYFSKRYGITLRHPGQPLILLKQSHNPHNLLFNFHEEDARDQSSQIGPTTSKVPAHVHIPPELLYVLEFKRTVLKSFYLLPSLMYRIESLMLSSQLREEIYGQSSKSNIHSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSLAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNVMKWLGIGTELELSLVDEAITAASLRTCVPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLNQISEYVKAISELDPRSLPSIRAPKALGDLVESIVGAMLIDTKLSLGDVWDVFYPLLSPIVTPEKLELPPFRELNELCDSLGYFVKVNENGEKKGSMVHVMVSVQLPNELLVREGKGANKKTAKGEASFHLLKDLEKRGISHCNFISKGKRDNPDPMNDSSHLKMDSSACFTQIEEHSSEPVSHKRKKLDETNPTDSILPLKDFSSDDPGFSASIPVNLSINMKKGGPRTTLYEVCRKLQWPVPAFDSTEYKDRSLFESCEGLQGSKGLNCFVSKITLCIPNYGNIDCKGEARSDKKSSFDSAAVNMLFELQKLGKVEIDPPPSS 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00669 1626 SUPERFAMILY RNase III domain-like 1200 1364 IPR036389 GO:0004525|GO:0006396
Spst9g00669 1626 CDD RIBOc 1007 1171 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 Gene3D - 1535 1615 - -
Spst9g00669 1626 Gene3D Ribonuclease III domain 990 1171 IPR036389 GO:0004525|GO:0006396
Spst9g00669 1626 FunFam Endoribonuclease dicer-like 1 523 619 - -
Spst9g00669 1626 Gene3D paz domain 834 961 - -
Spst9g00669 1626 Gene3D - 32 160 IPR027417 -
Spst9g00669 1626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 479 IPR027417 -
Spst9g00669 1626 Gene3D - 322 492 IPR027417 -
Spst9g00669 1626 MobiDBLite consensus disorder prediction 8 22 - -
Spst9g00669 1626 Pfam Dicer dimerisation domain 528 612 - -
Spst9g00669 1626 MobiDBLite consensus disorder prediction 1476 1502 - -
Spst9g00669 1626 ProSiteProfiles Ribonuclease III family domain profile. 1201 1344 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 Gene3D Ribonuclease III domain 1197 1367 IPR036389 GO:0004525|GO:0006396
Spst9g00669 1626 SUPERFAMILY PAZ domain 848 963 IPR036085 GO:0005515
Spst9g00669 1626 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 528 618 IPR005034 GO:0016891
Spst9g00669 1626 MobiDBLite consensus disorder prediction 1 22 - -
Spst9g00669 1626 Pfam PAZ domain 848 984 IPR003100 GO:0005515
Spst9g00669 1626 Pfam Ribonuclease III domain 1237 1343 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 Pfam Ribonuclease III domain 1025 1159 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 MobiDBLite consensus disorder prediction 1479 1494 - -
Spst9g00669 1626 SMART riboneu5 1216 1367 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 SMART riboneu5 1007 1180 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 FunFam Dicer-like 104 983 1172 - -
Spst9g00669 1626 CDD RIBOc 1217 1365 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 SMART PAZ_2_a_3 823 987 IPR003100 GO:0005515
Spst9g00669 1626 FunFam Endoribonuclease dicer-like 1 1195 1365 - -
Spst9g00669 1626 ProSiteProfiles PAZ domain profile. 848 963 IPR003100 GO:0005515
Spst9g00669 1626 Gene3D - 1370 1439 - -
Spst9g00669 1626 ProSiteProfiles Ribonuclease III family domain profile. 988 1160 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 FunFam Dicer-like 104 839 960 - -
Spst9g00669 1626 SUPERFAMILY RNase III domain-like 1000 1178 IPR036389 GO:0004525|GO:0006396
Spst9g00669 1626 Gene3D Dicer dimerisation domain 523 620 IPR038248 -
Spst9g00669 1626 SMART helicmild6 372 459 IPR001650 -
Spst9g00669 1626 Pfam Type III restriction enzyme, res subunit 38 128 IPR006935 GO:0003677|GO:0005524|GO:0016787
Spst9g00669 1626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 499 IPR001650 -
Spst9g00669 1626 PANTHER DICER-RELATED 50 1446 - -
Spst9g00669 1626 ProSitePatterns Ribonuclease III family signature. 1237 1245 IPR000999 GO:0004525|GO:0006396
Spst9g00669 1626 Pfam Helicase conserved C-terminal domain 358 456 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00669 Spst-Chr9 5799446 5815870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00669 383 456 Eukaryotic Initiation Factors Gene Family AT3G19760 40.000 4.77e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00669 K11592 - gmx:100806831 2515.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00669 9 5799446 5815870 Spst9g00669 9 5799446 5815870 ECH
Spst3g02806 3 77624992 77634987 Spst9g00669 9 5799446 5815870 ECH
Spst9g02786 9 62038085 62053559 Spst9g00669 9 5799446 5815870 ECH