Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00662 ATGTTTGTAAGGGGTTGGGGAAGTGTAGGAATAACTCTGCCAAGTGGGAATATGGCAACCCTATTCAGGAAGAGGTCTAGAAGTCAAGGAATCTTTCTAAGGGTAGTTAGGACTTGGAAGAATGAATCAGAGGAACAGGTTTTGAAACAAGGTTCTTTCCAAAGGTTATGCCTCTCGGATATAAGCATTCCTAGCTCCCCTCAGGCCATTGAAGATCTTTCCATTTCCCTGGTTGGCCCAAAGCTTTACACATTCACCCTAGAGGAGCTAAGGGAAGCAACACATAATTTCTCATGGAGTAATCTTCTTGGTGAAGGAGGGTTCGGGCCTGTGTATAAAGGTTTTGTTGATGACAAACTTAGACCTGGTTTGAAGGCTCAGTCTGTAGCTGTGAAACAACTGAACTTGGATGGCTTCCAAGGTCACAGGGAGTGGCTGGCGGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATTGGTTACTGTTGTGAGGAGGAGCACAGGCTTCTTGTGTATGAATACATGGCTAGAGGCAGCTTGGAGAATCAACTGTTTAGAAGATACTCTGCTGCCTTACCATGGTCAACTAGAATGAAGGTTGCATTAGGTGCAGCTAAGGGTCTGGCCTTCCTTCACGAAGCAGATAAACCTGTAATATACAGAGATTTCAAAACTTCAAATATCTTACTAGACTCGGATTACACAGCTAAATTATCAGATCTTGGGCTAGCAAAAGATGGTCCTGAAGGGGAAGATACACATGTAACAACAACATGCATAATGGGAACCCGAGGCTATGCTGCTCCTGAGTACATAAAGTCAGGTCACCTTTCCACCAAGAGTGATGTGTATAGTTATGGAGTGGTTTTGTTGGAATTGCTTACAGGAAGAAGGGTAGTGGATAAGTGCCGACCCAATAGAGAACGAAGCCTTGTGGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGAAAGCTGCACCATATAATAGACCCAAGATTGGAAGGGCAGTTTCCTACGAAAGGATCTTTGAAGGTTGCTGCGTTGACCTATAAATGTTTGAGTCACCACCCCTATACACGGCCAACTATGAGTGATGTGGTTAAGATATTAGAGTCTCTTCAGGATTTTGACGATGTGATCATAGGACCATTTGTGTATGTAGCGGTGAGTGAAAGTAGCCATTGA 1200 0.4375 MFVRGWGSVGITLPSGNMATLFRKRSRSQGIFLRVVRTWKNESEEQVLKQGSFQRLCLSDISIPSSPQAIEDLSISLVGPKLYTFTLEELREATHNFSWSNLLGEGGFGPVYKGFVDDKLRPGLKAQSVAVKQLNLDGFQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKVALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEDTHVTTTCIMGTRGYAAPEYIKSGHLSTKSDVYSYGVVLLELLTGRRVVDKCRPNRERSLVEWARPLLRDQRKLHHIIDPRLEGQFPTKGSLKVAALTYKCLSHHPYTRPTMSDVVKILESLQDFDDVIIGPFVYVAVSESSH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00662 399 Gene3D Phosphorylase Kinase; domain 1 62 179 - -
Spst9g00662 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Spst9g00662 399 SUPERFAMILY Protein kinase-like (PK-like) 73 377 IPR011009 -
Spst9g00662 399 ProSiteProfiles Protein kinase domain profile. 97 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00662 399 Gene3D Transferase(Phosphotransferase) domain 1 180 385 - -
Spst9g00662 399 PANTHER OS01G0588500 PROTEIN-RELATED 64 379 - -
Spst9g00662 399 Pfam Protein tyrosine and serine/threonine kinase 100 375 IPR001245 GO:0004672|GO:0006468
Spst9g00662 399 CDD STKc_IRAK 103 378 - -
Spst9g00662 399 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 180 384 - -
Spst9g00662 399 FunFam Serine/threonine-protein kinase BIK1 64 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00662 Spst-Chr9 5774939 5777450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00662 84 375 Glycoside Hydrolase AT3G07070 52.203 2.03e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst9g00662 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00662 - - gmx:100813130 662.529