Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00642 ATGAGAAAGTCCGTCAAGTCATTCCCTCCTCCTACACGGAGAAAAGTAATTGAAGCCATCCACAAGATGAATTCAAGTCAGAGCCAAAGGACTCAGCACAACCTTTCTCGCCAATCATCGAAGTCGAAGAGTGGATGCTGTCGAGGCTTCAGCAGTGTTGAGACTGTGTCATCCACCGCACCAACCTTGCAACACCATCAGCTTCAGCAGCGTTTCCAAAAATTGGAACTAGAGGTGGCAGGTTTGGAAAAAGAGGTGAGAAGGCAGACAGAACTGCGAGTGATGTATAGGAAGAGAATGGAAACCACGCAAGATTACTTGAAATATTGTCTCCAAATAGCACAAGAAAATGGAATCATGGACCTCATTATCCACTCCAAAGGTGAACTCTCACAATCTCCCCTCTCTCTGCATACCGTCAACTCCACTCCCACAACACCTCAAATCCCCACTCCTTCGCACCACCACCCCAATCTAATGGCCATCGTTGATCAAGCTAAAACCAACGGATGGTTCATTAACCCTAGCGAGATTCAATTGGGAGAAAAAATAGGGCAGGGAACCACGGCGGAGATTTATAGAGGGACGTGGCGCGGATTTGACGTGGCGGTGAAGTGCATGTCTGCTGCATTCTTCAGCAAAAATGAAAACGGTGTCGTATTCTTCGCTCAGGAGGTTGAAACCCTCTCGAAGCAGCGTCACCGGTTTGTGCTTCACCTCATGGGTGCGTGTCTGGAGCCACCGCATCATGCATGGGTGGTTACCGAGTATCTGAACACCACGCTCAAGGAGTGGCTTCATGGGCCGGGCAAAAGGCCCAAAGACAGAACCCTGCCACTTCCTCCCTTCAAAGACAGGGTGATGCGGGCCCTGGAAATAGCCCAAGCCATGCAGTATCTCCACGAACAAAAGCCCAAGGTGATTCATCGGGACTTGAAGCCCAGCAACATCTTCTTGGACGATGCCTTGCATGTAAGAGTGGCGGATTTTGGACACGCACGGTTCTTGAGTGATGACGAAATGGCCCTCACTGGAGAAACAGGAACATATGTGTATATGGCACCGGAGGTAATTCGGTGCGAGCCCTACAATGAAAAATGTGATGTATACAGTTTTGGAATCATACTGAACGAGTTACTTACTGGAAAATACCCTTATATTGAGACAGAATTTGGTCCCGCCAAGATTGCCATGGAAGTGGTGGAGAATGAGCTAAGGCCTGTACTTGCATCAGGGGACGATGGTGAGCAACTGGGAGAGAAGCAGGGTCTGCAAGGCGGCGAAGTGAGCATGGCTGAGAAGAAAAGGGAAGTGATGTTGGCGATTCCGAATGAGGGTGGTGATGAATCTTTGATGCCAAAGCAGCAGAGCCGGGTGAATTCGCCACACAGAATGTTAAACGACAACGAGTTTGCTGCAAAGTCGCCACCTTTGAACTGTTCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGGTTCCCACTTCCAGCGCCAATCTCACCCGGAGAAAATCTCTCACAAGGTCAGTCTATTCCAAACCTAAATCGAGGTTTGGTGAACAGCCTTACCCCGTTGATGGGACCCTTTTGGAAGAGAATGGTGCCTCAACGTTGCAAGAAAATTTGACTGTTGGTTCACCATATAAAGCATCGCCTAATAACAACAATAAACCTGCTGCAACTGTTAATAGAACAGTCTCCATCCTTTCTGTGATAACTCCCAAGACGCCATTGATGGCGTCTCCAGGGCCGGCCGGCGGGGAGGATTTCGATGAAATCATTTACAGGAAAGTTGAATTGAGTAAAAGCAAGCGTACTAAGAGAGTGACAGCTATGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGTTTGGTGGCTAGTTTAACAGTTGGAAAACTTAAAAGAACGGAGATTTGGGGTTTGGGGATTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACCAGATGGTTCATGCGCATTGTTGTTTTCTTGATTGAGACTAACTTTTTATTGAGGAAAAAGGTGCTGTATTTTGTTCATGGACTGAAAAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGCTGATAAACCCCGGGGTCCACCGATCTGAATTGGCAACAAAGATTTTGGATGGCGTAACATGGACTCTTGTTTCCGTCCTCATTGGAGCATTCCTTTGGTTCGTGAAGACATTGTTGCTGAAGCTTTTGGCGTCAAATTTCCATGTTAAATCTTTCTTTGATCGAATTCAAGAATCACTCTTTCATCAGTACATTCTGCAGACTCTCTCTGGGCCACCGCTTGTAGAAGAGGCTGAGAAGGTCGGGGCATCGCTCAGTGTTGGTCGCTTTAGTTTCAAGAGTACAGATGGTAAAGGTGGAACGAAGAAAGAGACTATTGATATAGCGAAGCTTCACCAGATGAAACAAGAAAAGGTTTCTGCATGGACTATGAAGGTCTTGGTGGATGCAATGACAAATTCAGGGCTGTCCACAATCTCTAGTGCACTAGAGGAAAGTTTTGATGATGGAGAAAATGAACTGACTGATAAAGAGATTTCTAATGAGATGGAAGCAACTGCTGCAGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCAAGTACATTGATGAGGATGAACTTCGGAGGTTCATGATAAAGGAAGAAGTGCGGATGGTATATCCCTTACTGGCTGAAGCCGAAACCGGGCAGATTACCAGGAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGCGACACCAAAACTGCTGTGAAACAACTAAACAAGCTCGTTACAGTAATCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCAACTACAAAAGTACTTGTATTCCTCTCTTCCCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACTTGCAAAAATATATTTGAAGCTATCATCTTTGTGTTTGTGATGCATCCATTTGATGTTGGTGATCGATGTGTTGTCGATGGGGTTGAGCTATTGGTTGAAGAAATGAATATATTGACCACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAATTCCCTCTTGGCCACGAAACCGATTAGCAATTATTACCGAAGCCCAGATATGGGTGACCGTGTAGAGTTCTCTATTGATTTTACAACACCAGCTGAAAAAATTGGGGCACTGAAAGAAAGAGTGAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCTAATCATGGCTTAGTGGTTAAGGATATTGAAGACGTAAACAAGATTAAGATGGGTATAAACGTTACTCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGAGAAGAACTGAATTGGTGATGGAAATAAAGAAAATATTTGAAGAACTCAACATCAGATACAACCTTCTACCACAAGGCATTCATCTCAGACATATGGAGCCAGATCCTGGGGAAGTAGAGAATCTCCCACGTAGGATAACCTACAAGTGCCACGTAATCAGAAAATCTCGAGTTGTGTCCATTTCATTATCCAGTCCTGAGCTCCACCTCTTGAGCAGAATCTTGAGGCCAGATCAGGTAAGCACAACCAAGGCAACACCTGAGATGGCTTCTGCTACTGCTTCTGCTTCTGCTTCTGTTCCAGTAGTGGCTTTGTCTCTAACCTCAATTACCCACAGCAAGCCTTCATCCCAAGCCTTCTTCAGGCCATTACCCCTATCCCAACCAAAGAGGACCCTCTCCACAAAGCCACTGTCAAAGTCCAACTTTCAAATTAACGCATCTTTGAAGGAGAAGGCAGTGACAGGACTCACAGCCGCAACCTTCACAGCCTCTATGGTGATCCCAGAGGTGGCCAATGCTGCTGGATCCGACTTCTCCCCTTCTCTCAAGAACTTTCTGCTCAGCATCTTCGCTGGTGGGGTTGTGCTAGTAGCCATATTTGGAGCAGTTGTTGGAGTTGCCAACTTTGATCCGGTTAAGAGAACTTAA 4095 0.4576 MRKSVKSFPPPTRRKVIEAIHKMNSSQSQRTQHNLSRQSSKSKSGCCRGFSSVETVSSTAPTLQHHQLQQRFQKLELEVAGLEKEVRRQTELRVMYRKRMETTQDYLKYCLQIAQENGIMDLIIHSKGELSQSPLSLHTVNSTPTTPQIPTPSHHHPNLMAIVDQAKTNGWFINPSEIQLGEKIGQGTTAEIYRGTWRGFDVAVKCMSAAFFSKNENGVVFFAQEVETLSKQRHRFVLHLMGACLEPPHHAWVVTEYLNTTLKEWLHGPGKRPKDRTLPLPPFKDRVMRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDALHVRVADFGHARFLSDDEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGIILNELLTGKYPYIETEFGPAKIAMEVVENELRPVLASGDDGEQLGEKQGLQGGEVSMAEKKREVMLAIPNEGGDESLMPKQQSRVNSPHRMLNDNEFAAKSPPLNCSSPEIRFMPSPNKPPKVPTSSANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGASTLQENLTVGSPYKASPNNNNKPAATVNRTVSILSVITPKTPLMASPGPAGGEDFDEIIYRKVELSKSKRTKRVTAMVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINPGVHRSELATKILDGVTWTLVSVLIGAFLWFVKTLLLKLLASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASLSVGRFSFKSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSGLSTISSALEESFDDGENELTDKEISNEMEATAAAYYIFRNVAAPGCKYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVKQLNKLVTVILVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSLLATKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALKERVKRYLERNPQYWHPNHGLVVKDIEDVNKIKMGINVTHTMNFQEFGEKTKRRTELVMEIKKIFEELNIRYNLLPQGIHLRHMEPDPGEVENLPRRITYKCHVIRKSRVVSISLSSPELHLLSRILRPDQVSTTKATPEMASATASASASVPVVALSLTSITHSKPSSQAFFRPLPLSQPKRTLSTKPLSKSNFQINASLKEKAVTGLTAATFTASMVIPEVANAAGSDFSPSLKNFLLSIFAGGVVLVAIFGAVVGVANFDPVKRT 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00642 1364 MobiDBLite consensus disorder prediction 411 430 - -
Spst9g00642 1364 ProSiteProfiles Protein kinase domain profile. 178 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00642 1364 Pfam Photosystem II reaction centre X protein (PsbX) 1328 1363 IPR009518 GO:0009523|GO:0015979|GO:0016020
Spst9g00642 1364 Gene3D Transferase(Phosphotransferase) domain 1 259 444 - -
Spst9g00642 1364 Coils Coil 65 92 - -
Spst9g00642 1364 MobiDBLite consensus disorder prediction 487 529 - -
Spst9g00642 1364 Gene3D - 1021 1070 IPR023408 -
Spst9g00642 1364 ProSitePatterns Protein kinases ATP-binding region signature. 184 205 IPR017441 GO:0005524
Spst9g00642 1364 FunFam Predicted mechanosensitive ion channel 1021 1070 - -
Spst9g00642 1364 Pfam Protein kinase domain 180 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00642 1364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Spst9g00642 1364 Gene3D Single helix bin 1327 1364 - -
Spst9g00642 1364 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 468 1183 IPR016688 -
Spst9g00642 1364 SMART serkin_6 178 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g00642 1364 SUPERFAMILY Sm-like ribonucleoproteins 1011 1070 IPR010920 -
Spst9g00642 1364 SUPERFAMILY Protein kinase-like (PK-like) 166 408 IPR011009 -
Spst9g00642 1364 Gene3D Phosphorylase Kinase; domain 1 166 258 - -
Spst9g00642 1364 Pfam Mechanosensitive ion channel 961 1167 IPR006685 GO:0016020|GO:0055085
Spst9g00642 1364 MobiDBLite consensus disorder prediction 22 47 - -
Spst9g00642 1364 MobiDBLite consensus disorder prediction 497 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00642 Spst-Chr9 5607994 5616967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00642 473 1177 Mechanosensitive Ion Channel Family AT5G12080 59.437 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Spst9g00642 Pkinase 7.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00642 K22048 - gmx:100803107 1346.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00642 9 5607994 5616967 Spst9g00642 9 5607994 5616967 ECH