Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00638 ATGGAAGCAGCCGGAGGAGCTCTCTCTGATCCCCATTCCGTTGACAAGATCTTCCGAGATTTCAAGGCCCGCAGAGCTGCCATTGTTAAGGCCCTCACTACCGAATATAAAGAGTTCCATCAGAAGTGTGATCCAGCAAATAATGATTATCTTTGTCTTTTCGGATTTCCTGACGAGCACTGGGAAGTCAGTCCTGCTAAGATGCTGCCTCCAGTGCTTCCAAAGCCAGTTTCAGGCATTAACTATAACAGAGATTTAGCGCCAGAAAAGAACTGGCTATCCTTAGTTGCTATACGCAGTGATACATGGTTACTTTCTGTGGCTATGTATTTTGGTGCAAAAATTGGGTTTGATAAGGCTGATAGGAGACGTCTTTTTAATATGATAAATGATCTTCCAACAATATTCGAGGTTGTTGAAAGGGAGGCCAAGAAACAAAGAAAGGAAAGGAAATCGAACTCTAAGGGGGAAGGTTATGAACGATCACAGACTGAGAGTATTCAAAAGCAACGGAATCAAAGGTCGAGGATGGTTTGGAAGAGGACGATGAAGAAGAGCATAGAGAGACACTTTGTGGGGCATGTAGCTGATGCTGATGAGTTCTGGATTTGCTGTGAAATTTGTGAGAGTTGGTTTCATGGGAAATGTGTGAATATTACCCCTGCTAAGGCTGAGTATATCAAGCACTACAGATGTCCACCATGCAGCAACATGAAGCTCTCTCTTCAACACATGGACGCAGGAGAAGGAGCTTCCTACAATCCCCGTTCTGTTCTCGAGGTCTTCAGAGATTTCAAGGGCCGCAGAGCCGCCATTCTTAAGGCCCTCACCACCGATGTTGAATTGTTCTATCAGCAGTGTGATCCAGAGAAGGAAAATCTTTGTCTATATGGATTTCCTAATGAGAACTGGGAAGTCAATCTTCCTGCTGAGGAGGTTCCTCCAGAACTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATACATGGCTAATGGCTGTGGCTCTGTTTTTTGGTACTAGATTTGGGTTTGATAAGACTGATAGGAAGAATCTTTTTAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTGCAGGGAAGCCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCGTTACAATAACAAATCTAAATCAAACTCTAAGAAAGGTTCTGAATCACAAGAAAAGTGTTTAAAAGCAATGGAATCAAAGGAAGAGGATGCTTTGCTAGAGGACAAAGAAGAAGAGCATGGAGAGACACTTTGTGGAGCATGTGGACAGAACTTTGCTGCTGATGCTGAGGAGTTCTGGATTTGCTGTGACATGTGTGAGACGTGGTTTCATGGGAAATGCGTGAAAATTACCCCTGCGAAGGCTGAGAGTATCAAGCACTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGTCAATTGTAG 1503 0.4345 MEAAGGALSDPHSVDKIFRDFKARRAAIVKALTTEYKEFHQKCDPANNDYLCLFGFPDEHWEVSPAKMLPPVLPKPVSGINYNRDLAPEKNWLSLVAIRSDTWLLSVAMYFGAKIGFDKADRRRLFNMINDLPTIFEVVEREAKKQRKERKSNSKGEGYERSQTESIQKQRNQRSRMVWKRTMKKSIERHFVGHVADADEFWICCEICESWFHGKCVNITPAKAEYIKHYRCPPCSNMKLSLQHMDAGEGASYNPRSVLEVFRDFKGRRAAILKALTTDVELFYQQCDPEKENLCLYGFPNENWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDTWLMAVALFFGTRFGFDKTDRKNLFSMINDLPTIFEVVAGKPKKQGKEKSSVSNRYNNKSKSNSKKGSESQEKCLKAMESKEEDALLEDKEEEHGETLCGACGQNFAADAEEFWICCDMCETWFHGKCVKITPAKAESIKHYKCPSCSNKRARQL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00638 500 PANTHER CPG BINDING PROTEIN 254 499 IPR045104 GO:0006355|GO:0042393
Spst9g00638 500 SUPERFAMILY FYVE/PHD zinc finger 433 496 IPR011011 -
Spst9g00638 500 ProSiteProfiles Zinc finger PHD-type profile. 441 495 IPR019787 -
Spst9g00638 500 MobiDBLite consensus disorder prediction 390 418 - -
Spst9g00638 500 MobiDBLite consensus disorder prediction 143 175 - -
Spst9g00638 500 SMART PHD_3 443 493 IPR001965 -
Spst9g00638 500 SMART PHD_3 200 236 IPR001965 -
Spst9g00638 500 CDD PHD_AL_plant 193 237 IPR044104 -
Spst9g00638 500 CDD PHD_AL_plant 443 495 IPR044104 -
Spst9g00638 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 237 IPR013083 -
Spst9g00638 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 494 IPR013083 -
Spst9g00638 500 Pfam PHD-finger 444 495 IPR019787 -
Spst9g00638 500 Pfam PHD-finger 196 237 IPR019787 -
Spst9g00638 500 ProSitePatterns Zinc finger PHD-type signature. 444 492 IPR019786 -
Spst9g00638 500 Pfam Alfin 258 384 IPR021998 GO:0006355|GO:0042393
Spst9g00638 500 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Spst9g00638 500 SUPERFAMILY FYVE/PHD zinc finger 196 240 IPR011011 -
Spst9g00638 500 FunFam PHD finger alfin-like protein 436 494 - -
Spst9g00638 500 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00638 Spst-Chr9 5556262 5563869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00638 248 498 Alfin-like Transcription Factor Family AT3G42790 69.323 9.32e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Spst9g00638 Alfin 3.7e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00638 K26274 - pop:7476667 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00638 9 5556262 5563869 Spst9g00638 9 5556262 5563869 ECH
Spst9g00638 9 5556262 5563869 Spst4g02188 4 62631490 62635659 ECH
Spst9g00638 9 5556262 5563869 Spst5g00305 5 2617452 2621248 ECH
Spst9g00638 9 5556262 5563869 Spst8g02390 8 35382978 35387484 ECH