LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g00608	ATGAAGGGAGTTGTAGTGAAAGAGGAAGAAACAATACAATTTGCAGCTTCTACATCTTCGTCTTCATCCTCAACTTCCAACCTCTCCCCGCAACCCATGGAAGGGTTGCACGAGGTGGGTCCCACTCCGTTTCTCACCAAAACCTTCGACGTTGTGGAAGACCCTTCCACCAACGACATCGTTTCCTGGAGCAGAGCGCGTAACAGTTTCGTTGTTTGGGACTCTCACAAGTTCTCCACCACTATCTTGCCTCGGTACTTCAAGCACAATAATTTCTCCAGCTTCGTCCGGCAGCTCAACACCTACGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTTTGGCTGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTGACACATACACAGTCACACGAGGGAGGAAGTGGGGCTTGTGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTGTTGATGGCTGAAATTGTGAGGTTGAGGCAACAACAGCACAATTCAAGGGAGCAATTGCTGTCCATGGAGACCAGATTGCAAGTCACCGAGAAGAAACATCAGCAGATGATGGCTTTTCTTGCTAAGGCACTCAACAATCAGGCTTTTATTCAGCAGTTCCTCCACAGGAACGCACAGAAGATAGAGTTGCAAGGTGCTAAAAGAAAAAGGAGACTAACTGCCTCCCCAAGTGTAGAGAATTTGCAGCAAGATCCTGTCATTGATGTGGTATTGCCAGTTGAAGAGGAATCCGCAAGTATTGAGTCGCACATGGAGTCTCTTCTCTCAGCTGTTTGTGACGATGATCCATTAGAATCAAGCACTGAAATCGAAGACCCGATTTTGAGTTCAGTTCCTACTACTGGTGGTGGGAGTATGGGGGTGGTGAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTGCGAACGAGGAAGTTGTGATTGGTGACTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTACAGAGGCTGATGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATCTGGGTTATCTTGGATCCGTTGAAAAAGATGATACTAATTCTAATCTAGAATAG	1149	0.4674	MKGVVVKEEETIQFAASTSSSSSSTSNLSPQPMEGLHEVGPTPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVTHTQSHEGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVRLRQQQHNSREQLLSMETRLQVTEKKHQQMMAFLAKALNNQAFIQQFLHRNAQKIELQGAKRKRRLTASPSVENLQQDPVIDVVLPVEEESASIESHMESLLSAVCDDDPLESSTEIEDPILSSVPTTGGGSMGVVSDAIWEDLLNQDLVAANEEVVIGDFSQVDVPVEDLVTEADDEWSEDLQNLVDHLGYLGSVEKDDTNSNLE	382

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst9g00608	382	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	30	263	IPR027725	-
Spst9g00608	382	MobiDBLite	consensus disorder prediction	15	34	-	-
Spst9g00608	382	Gene3D	-	37	134	IPR036388	-
Spst9g00608	382	MobiDBLite	consensus disorder prediction	15	32	-	-
Spst9g00608	382	FunFam	Heat shock transcription factor 1	37	134	-	-
Spst9g00608	382	SUPERFAMILY	"Winged helix" DNA-binding domain	40	133	IPR036390	-
Spst9g00608	382	PRINTS	Heat shock factor (HSF) domain signature	44	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Spst9g00608	382	PRINTS	Heat shock factor (HSF) domain signature	95	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Spst9g00608	382	PRINTS	Heat shock factor (HSF) domain signature	82	94	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Spst9g00608	382	Coils	Coil	161	181	-	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g00608	Spst-Chr9	5357808	5359165	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g00608	11	371	HSF	AT2G26150	52.198	4.03e-121	352

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Spst9g00608		HSF_DNA-bind	1.9e-32	CL0123

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g00608	K09419		-	gmx:100794605	583.178

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g00608	9	5357808	5359165	Spst9g00608	9	5357808	5359165	ECH
	Spst8g02366	8	34873774	34876359	Spst9g00608	9	5357808	5359165	PCT

Showing 1 to 2 of 2 entries

Previous1Next