Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00608 ATGAAGGGAGTTGTAGTGAAAGAGGAAGAAACAATACAATTTGCAGCTTCTACATCTTCGTCTTCATCCTCAACTTCCAACCTCTCCCCGCAACCCATGGAAGGGTTGCACGAGGTGGGTCCCACTCCGTTTCTCACCAAAACCTTCGACGTTGTGGAAGACCCTTCCACCAACGACATCGTTTCCTGGAGCAGAGCGCGTAACAGTTTCGTTGTTTGGGACTCTCACAAGTTCTCCACCACTATCTTGCCTCGGTACTTCAAGCACAATAATTTCTCCAGCTTCGTCCGGCAGCTCAACACCTACGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTTTGGCTGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTGACACATACACAGTCACACGAGGGAGGAAGTGGGGCTTGTGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTGTTGATGGCTGAAATTGTGAGGTTGAGGCAACAACAGCACAATTCAAGGGAGCAATTGCTGTCCATGGAGACCAGATTGCAAGTCACCGAGAAGAAACATCAGCAGATGATGGCTTTTCTTGCTAAGGCACTCAACAATCAGGCTTTTATTCAGCAGTTCCTCCACAGGAACGCACAGAAGATAGAGTTGCAAGGTGCTAAAAGAAAAAGGAGACTAACTGCCTCCCCAAGTGTAGAGAATTTGCAGCAAGATCCTGTCATTGATGTGGTATTGCCAGTTGAAGAGGAATCCGCAAGTATTGAGTCGCACATGGAGTCTCTTCTCTCAGCTGTTTGTGACGATGATCCATTAGAATCAAGCACTGAAATCGAAGACCCGATTTTGAGTTCAGTTCCTACTACTGGTGGTGGGAGTATGGGGGTGGTGAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTGCGAACGAGGAAGTTGTGATTGGTGACTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTACAGAGGCTGATGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATCTGGGTTATCTTGGATCCGTTGAAAAAGATGATACTAATTCTAATCTAGAATAG 1149 0.4674 MKGVVVKEEETIQFAASTSSSSSSTSNLSPQPMEGLHEVGPTPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVTHTQSHEGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVRLRQQQHNSREQLLSMETRLQVTEKKHQQMMAFLAKALNNQAFIQQFLHRNAQKIELQGAKRKRRLTASPSVENLQQDPVIDVVLPVEEESASIESHMESLLSAVCDDDPLESSTEIEDPILSSVPTTGGGSMGVVSDAIWEDLLNQDLVAANEEVVIGDFSQVDVPVEDLVTEADDEWSEDLQNLVDHLGYLGSVEKDDTNSNLE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00608 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 263 IPR027725 -
Spst9g00608 382 MobiDBLite consensus disorder prediction 15 34 - -
Spst9g00608 382 Gene3D - 37 134 IPR036388 -
Spst9g00608 382 MobiDBLite consensus disorder prediction 15 32 - -
Spst9g00608 382 FunFam Heat shock transcription factor 1 37 134 - -
Spst9g00608 382 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Spst9g00608 382 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00608 382 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00608 382 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00608 382 Coils Coil 161 181 - -
Spst9g00608 382 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00608 382 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00608 382 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00608 Spst-Chr9 5357808 5359165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00608 11 371 HSF AT2G26150 52.198 4.03e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst9g00608 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00608 K09419 - gmx:100794605 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00608 9 5357808 5359165 Spst9g00608 9 5357808 5359165 ECH
Spst8g02366 8 34873774 34876359 Spst9g00608 9 5357808 5359165 PCT