Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00576 ATGTTGACTCAACCTTGGTTAAATAACCCCTCTACCCACCACCTTATATACGTACACTCACTCCCCGGAACAAACCAACACAGACCAAATCACAAAACCATGATAGCAAACGTTCAAATCCCCCACTGGGACTCCGCCGCCGCAGACGGAGCACCTCTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGCCTCATTCTCCTCCGATCATTTCCGGATGTTCCAGTTCAAGGTGCGCGCCTGTCCACGTGGCAGGTCCCACGACTGGACCGAGTGTCCGTACGCCCACCCCGCCGAGAAGGCTCGTCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCGTGGCCTGCCCCGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGCCAGTTCGCGCATGGCGTCTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCAGCTCTGCAAAGACGGAACTAATTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACTAACGACCAGCTCCGCCTCGTAACCGAATCATCCTCTCTTTCCTCTCCCACTTCGGTTATTAACTCTTCCTTCTCCGATTCTCCACCCTCTTCTCCTTACGTACAGAACATACAAGACATAGTTACCTCAATGCGGAGTGTTCAACTGGAGGATGGACTTTATTCGGGTTTGACCCGGTGCGTGTTCGGGTCACCACGTGGCGGGTTTTTAAGTGCTAATGGGTGTGAGGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCTGGAAGAGATATTAGAGCGAGAATCTACGCGAAGCTTAGTAGAGAGAATTCGATTGGAGGTTCTGCTCCTGACATTGGATGGGTATCGGAACTGGTTAATGGATTGGGTGGCATTTGA 879 0.5427 MLTQPWLNNPSTHHLIYVHSLPGTNQHRPNHKTMIANVQIPHWDSAAADGAPLSPFSPNAPDTASFSSDHFRMFQFKVRACPRGRSHDWTECPYAHPAEKARRRDPRKFLYSAVACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTQLCKDGTNCRRRVCFFAHTNDQLRLVTESSSLSSPTSVINSSFSDSPPSSPYVQNIQDIVTSMRSVQLEDGLYSGLTRCVFGSPRGGFLSANGCEEEEPAMERVESGRDIRARIYAKLSRENSIGGSAPDIGWVSELVNGLGGI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00576 292 Gene3D - 110 173 - -
Spst9g00576 292 SUPERFAMILY CCCH zinc finger 110 139 IPR036855 GO:0046872
Spst9g00576 292 PANTHER UNKEMPT FAMILY MEMBER 49 286 IPR045234 -
Spst9g00576 292 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Spst9g00576 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 135 IPR000571 GO:0046872
Spst9g00576 292 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
Spst9g00576 292 Coils Coil 292 292 - -
Spst9g00576 292 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Spst9g00576 292 SMART c3hfinal6 110 136 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00576 Spst-Chr9 5170069 5170947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00576 55 204 C2H2 Transcription Factor Family AT5G12850 57.237 1.94e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst9g00576 zf-CCCH 5.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00576 - K23048 gmx:100786368 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00576 9 5170069 5170947 Spst9g00576 9 5170069 5170947 ECH