Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00574 ATGGAGGAATACACCAATAATAATCACGTGAGGGAAAACACAAGTCCAAGTTCAAGTCCAAGGGAAAATCTGTTGTACTTCTTGGCTGGTGGTTCAAGGGTAGGAAACCGCCACCACCAGCTTCCATTGAGCACTTTTCATCTTCAATCTGTTGGATCTGATCAGTGTTTTCAGCCTGATCAAGTACCACACTCTACTGTGAAAATCGAGTCCAACAACTCTCCTATCTTCCAGTACCCTCTAATGAGACCAAATCTTCACCACACAACGCATCCTCAGCAAGGGGGAAGCCAGAGTTCTAACCAACTTGAAGACATAAAAGCCAAAATCATTGCTCATCCTCACTACTCCAATCTTTTACAAGTTTACATGGACTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGTGGCGCGTTTGGCTGCGGTTAAACAGGATTTTGAGGCACGGCAGCGATCTTTGGGTAGGTCCAGGGGAACCTGCAAGGACCCAGAACTTGATCAGTTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGAGAGGAGTTAACCAGGCCCATACAAGAAGCTATGGATTTCATGCGGAGGGTAGAAACTCAGCTCAACACTCTTTGCAATGGAACCGTGCGGATTTTCTCTGAAGCTCGATTCGACGAATCTACAGGTAGTATGAATGGTGGTACCCCGTTATTGGCATACTGCCTCACAAAACCAGGAAAAGATGATAATTGTGAAAACATAGGTTCATTAGAAGAGGATGAAGACAACAACAGTGGTGGAGAAGCAGAACTGAACGAAATTGATCCCGGAGCAGAAGAGCGTGAACTGAAAAGCCACTTGCTGAGAAAATACAGTGGTTACTTAAGTAGCCTTAAGAAAGAGCTTTCAAAGACAAAGAAAAACGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTTCTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCACTGGCTGAAGCAACCTGTTTGGATCAGAAGCAAATAAATAATTGGTTCATAAACCAAAGGAAGCGGCACTGGAAACCATCTGAAGACATGCAGTATATGGTTAAGGATGGCCTGCATACGCAGAATGCAACTCTCTATATGGATGGCCTCTACTTCGCTAATGGCCAATACCGTTTAGGGCCATAA 1182 0.4467 MEEYTNNNHVRENTSPSSSPRENLLYFLAGGSRVGNRHHQLPLSTFHLQSVGSDQCFQPDQVPHSTVKIESNNSPIFQYPLMRPNLHHTTHPQQGGSQSSNQLEDIKAKIIAHPHYSNLLQVYMDCQKVGAPPEVVARLAAVKQDFEARQRSLGRSRGTCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVETQLNTLCNGTVRIFSEARFDESTGSMNGGTPLLAYCLTKPGKDDNCENIGSLEEDEDNNSGGEAELNEIDPGAEERELKSHLLRKYSGYLSSLKKELSKTKKNGKLPKDARQKLLSWWELHYKWPYPSESEKVALAEATCLDQKQINNWFINQRKRHWKPSEDMQYMVKDGLHTQNATLYMDGLYFANGQYRLGP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00574 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 363 - -
Spst9g00574 393 Gene3D - 301 362 - -
Spst9g00574 393 MobiDBLite consensus disorder prediction 1 22 - -
Spst9g00574 393 Pfam Homeobox KN domain 315 354 IPR008422 GO:0003677|GO:0006355
Spst9g00574 393 ProSiteProfiles 'Homeobox' domain profile. 295 358 IPR001356 GO:0003677
Spst9g00574 393 Pfam KNOX1 domain 106 146 IPR005540 GO:0003677|GO:0005634
Spst9g00574 393 Pfam KNOX2 domain 160 205 IPR005541 GO:0003677|GO:0005634
Spst9g00574 393 ProSiteProfiles ELK domain profile. 275 295 IPR005539 GO:0003677
Spst9g00574 393 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Spst9g00574 393 SMART HOX_1 297 362 IPR001356 GO:0003677
Spst9g00574 393 Pfam ELK domain 275 296 IPR005539 GO:0003677
Spst9g00574 393 SMART KNOX2_2 155 206 IPR005541 GO:0003677|GO:0005634
Spst9g00574 393 CDD homeodomain 299 359 IPR001356 GO:0003677
Spst9g00574 393 SMART ELK_2 275 296 IPR005539 GO:0003677
Spst9g00574 393 ProSitePatterns 'Homeobox' domain signature. 333 356 IPR017970 GO:0000981|GO:0006355
Spst9g00574 393 MobiDBLite consensus disorder prediction 8 22 - -
Spst9g00574 393 FunFam Homeobox protein knotted-1-like 2 300 362 - -
Spst9g00574 393 SUPERFAMILY Homeodomain-like 297 368 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00574 Spst-Chr9 5155347 5158649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00574 53 393 Homeobox Transcription Factor Family AT4G08150 59.195 6.15e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst9g00574 KNOX2 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00574 - - gmx:100798133 550.436