Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00573 ATGGTCTTTGACATCTCTCACCCAGGGCTTCGACTTGGTCTTGGTCTTGGTCTTGGCCTGCAAGACCAGTCGCAAGAAACTTGCTTGAAGAGCGATGAACAAAGGCAAAGACGAGGCCAGAAGAAAAAGGAAGCGGATCCACGTAACAAGGCTTACCCATCGCTTAGGTTAGGACCACCCCATCATGAGGCAAATAATAATCATCAAGTTACAAAGACTGAATCTGATGAATATCATAATATACAGCCTCGTGCCTCTTCTCCAAGTGCAGTGTCTTCGTTTTCTAACTCATCAAGCATCATCAAGAGAGAGAGAGATCAGTTCGCGGGCGAAGAACTTGAGCTAGAGATAGACAAGTTTCCCTCACACTTCAGGGTTGTGGATCTTGATGAAAATGGTTACCCCAAGAAGAAACTTAGGCTCAACAAAGAACAATCTGCAGTCTTGGAAGATAGCTTCAAGGAGCATTCTACTCTCACTCCGATACAGAAGCAAGAATTGGCAAATAAACTGAATCTGCGGGCGAGACAAGTGGAGGTATGGTTTCAGAACAGGAGAGCCAGGACAAAACTGAAACAAACGGAAGTGGACTGTGAGTTACTGAAAAAGTGCTGCGAAAGTCTAACAGAGGAGAACAAGATGCTGCAAAAAGAGTTGGAAGAGCTTAAATCGATGAAAACAGCATTGCAGGGACCCATTTTTATGCAGCTTCCAGTGGCAACCCTTACAATATGCCCTTCCTGTGAAAGAATTTGCGGTGGCAGCAGCGCCACCAACAACAATGGTTCCTCTCCCACCACCACCACTGCTTTGCTTGTGGGCCCAAAGCCCCATCATGATCACCACTTCTACAAAAATAACTACACATTCACACAGCCATCTGCAGCTTGCTAG 894 0.4586 MVFDISHPGLRLGLGLGLGLQDQSQETCLKSDEQRQRRGQKKKEADPRNKAYPSLRLGPPHHEANNNHQVTKTESDEYHNIQPRASSPSAVSSFSNSSSIIKRERDQFAGEELELEIDKFPSHFRVVDLDENGYPKKKLRLNKEQSAVLEDSFKEHSTLTPIQKQELANKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCESLTEENKMLQKELEELKSMKTALQGPIFMQLPVATLTICPSCERICGGSSATNNNGSSPTTTTALLVGPKPHHDHHFYKNNYTFTQPSAAC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00573 297 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Spst9g00573 297 CDD homeodomain 135 193 IPR001356 GO:0003677
Spst9g00573 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 267 - -
Spst9g00573 297 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Spst9g00573 297 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Spst9g00573 297 Coils Coil 191 228 - -
Spst9g00573 297 MobiDBLite consensus disorder prediction 25 94 - -
Spst9g00573 297 Gene3D - 130 197 - -
Spst9g00573 297 MobiDBLite consensus disorder prediction 28 50 - -
Spst9g00573 297 SMART HOX_1 135 196 IPR001356 GO:0003677
Spst9g00573 297 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Spst9g00573 297 SUPERFAMILY Homeodomain-like 128 193 IPR009057 -
Spst9g00573 297 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Spst9g00573 297 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00573 Spst-Chr9 5151587 5154040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00573 130 297 Homeobox Transcription Factor Family AT4G37790 60.000 1.74e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst9g00573 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00573 K09338 - gmx:100790927 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00573 9 5151587 5154040 Spst9g00573 9 5151587 5154040 ECH