Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00562 ATGAATTTGAAGATGGATTCTGACAGAGCAAAGCTGTTCATAGGTGGCATTTCTCGTGAAACCACCGAAAATGTTCTCAAATTCCACTTCGCCAAGTACGGCACCGTTTTGGACTCCACAATCTCTGTAGACCGCTGCACACGGTGCCCTAGAGGTTTCGGCTTCGTCACTTTCTCCGATCTGTCCGCCGCGGATCAAGCCCTCCAAGATACGCATGTCATTCTCGGAAGAACGGTTGAAGTGAAGAAAGCAATTCCCAGGAGTGAACAACAACTACACCAGAACCATTTGCACAATAGAGGGGGAAGTAACTATAATAGTAGTTGTGACTGTAGCAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTGGGGGGTTTACCTGCTGGTATATCGGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATAACTGACGTTGTGGTGATGCAGGACAGTCTCACTCACCGACCTAGGGGGTTTGGGTTCATCACGTTTGATTCCGAGGAATCGGTTCAAAACGTTATGGTGAAGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGGAACCCTGGGTATGATGGTTTTAGTAAATTGAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAGTTTTCCTCCTTATAGTCCTAGGAACATGCTTCCGGGTTTTGCTCCTTTACCGTGGTATAGTGGTGATGGAGTATATGCATATGGTTCTAATGCTTACGGTTGCTGGTACCCTATGGGTGGGTATGGGGGGAATGGATATGCAATTCCGTCTGATGCTTCTAGAAACTTCTGGTACGGGCCAATGATGCCTGGTCATCCTCAGGCATGTCAGTTGCCTTATGCTAGTGGTCTTCCAAACGTAGCGTATGTCGGTGGTAGGATTGGAATAGTAGGTAGTGGTGGAGGATCTTGGGGGCATGGTGGAATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTAATGGTAACGGATTTATTCCAGGTAGTGCGACATTGCCTCATGGTGTAAAGCAGGATGTTGTGGACTCTTCGAGTTTGAAAGGAAGCAATGGTGAAATATCTAGCTGA 1116 0.4606 MNLKMDSDRAKLFIGGISRETTENVLKFHFAKYGTVLDSTISVDRCTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQLHQNHLHNRGGSNYNSSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNPGYDGFSKLRNKSERGVPKSFPPYSPRNMLPGFAPLPWYSGDGVYAYGSNAYGCWYPMGGYGGNGYAIPSDASRNFWYGPMMPGHPQACQLPYASGLPNVAYVGGRIGIVGSGGGSWGHGGILGSATNLKFDQPFNGNGFIPGSATLPHGVKQDVVDSSSLKGSNGEISS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00562 371 SUPERFAMILY RNA-binding domain, RBD 116 206 IPR035979 GO:0003676
Spst9g00562 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Spst9g00562 371 FunFam RNA-binding protein 1 116 206 - -
Spst9g00562 371 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Spst9g00562 371 CDD RRM2_Hrp1p 121 198 - -
Spst9g00562 371 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 290 - -
Spst9g00562 371 Gene3D - 2 96 IPR012677 -
Spst9g00562 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Spst9g00562 371 MobiDBLite consensus disorder prediction 197 222 - -
Spst9g00562 371 SMART rrm1_1 121 193 IPR000504 GO:0003723
Spst9g00562 371 SMART rrm1_1 11 82 IPR000504 GO:0003723
Spst9g00562 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Spst9g00562 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Spst9g00562 371 Gene3D - 116 199 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00562 Spst-Chr9 5000915 5002178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00562 12 270 Eukaryotic Initiation Factors Gene Family AT4G34110 25.094 1.98e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00562 K14411 - gmx:100816822 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00562 9 5000915 5002178 Spst9g00562 9 5000915 5002178 ECH