Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00553 ATGGCAACAGAGCAGGATCTAGAAAAAGAAAGGGTTCGTACGACACACGAGACACCCCTTGGCCTCGGCATAGGCAACGCCAATGGCATCCCCTTTGCCCTTTCTGACACTGGTTTTGACCACTTTTGGTGGAAAGAGAAAGAGGAACATGCCCTCCACTTCTTAGCTCTCTCTCAACCTTTCTTTATTGCTCCCTCCCTCCTTTCCTCTCTCCCACACGCTTCTTCTTATCCTCATTCCCAATTTTCCCTTTCCTCAACTCCAATTCGCACCACATCTAGAAAATTCAACTGCACGTATGCAACAATGCCTCCGTACCAACAAGAGCTTGTAGTAGCAGCAAAAACAACAACCATGAAGGATGCTGATACTGCTAACGTTTTGGATCTGAAAACGTTAATTGAGGAGCTTGAATCATCGATTGAGGTTCCTTCCGTTTTTATCTGCCCAATCTCGCTGGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATTCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACAACAATGCAAGAGCTCTGGGACGATTCCGTCACGCCTAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAGAAGTACTTGGCCATGAAGAAGAAACTCGAGGACGTGCAAGGCACCGCCTTGGAGCTCTTGGACACGCTCAAAAGGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAACTCGTTGATTCCCACGTATCCACGAGGAAAACCGTTGAGGAAAACAACGGGCTTGTTTTGATTTCTTCCCTGTTGGGTCCTTTCACTTCGCACGCGGTTGGGTCGGAAGCAGTTGGGATTCTCGTGAATTTGGATTTGGGTTCGGACTTGAAGAGGAATCTCATGCAACCCGCGAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATTCAGACGAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTTTTAAGGTTAGTGAGAGATAAAAAACACCCAACAAGCGTTTTAACCGGGCTCATATTACTCAAAATTGTGTGTTCGCGTGAATCGGTTAGAACCACAATTGTAAGCATAGGAGCAGTGCCTCAATTGATTCAGCTTTTACCCACTTTGAACAACGAGTGCTTGGAGATAGCCCTTCATATTCTCGAAGTGTTGTCAACACTTCCTGAGGGAAGATTGGCTTTGAAAGAGTCTCCCAATATTATTCCCAATGTGGTCAAATTGTTGATGAGAGTCTCAGAAAGTTGCACACAATTCGCATTGTCGATTTTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCAAAAGCTGTTGAAGCAGGGTTGGCGGCGAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCAGTATTAAAGCAGAAATCTGCAGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGTATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1587 0.4631 MATEQDLEKERVRTTHETPLGLGIGNANGIPFALSDTGFDHFWWKEKEEHALHFLALSQPFFIAPSLLSSLPHASSYPHSQFSLSSTPIRTTSRKFNCTYATMPPYQQELVVAAKTTTMKDADTANVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNTTLHHFILSWFSQKYLAMKKKLEDVQGTALELLDTLKRVKGQNRVRALKQLRKLVDSHVSTRKTVEENNGLVLISSLLGPFTSHAVGSEAVGILVNLDLGSDLKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRTTIVSIGAVPQLIQLLPTLNNECLEIALHILEVLSTLPEGRLALKESPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00553 528 Gene3D - 228 362 IPR011989 -
Spst9g00553 528 ProSiteProfiles U-box domain profile. 142 216 IPR003613 GO:0004842|GO:0016567
Spst9g00553 528 SMART Ubox_2 146 209 IPR003613 GO:0004842|GO:0016567
Spst9g00553 528 PANTHER WDSAM1 PROTEIN 140 514 IPR045185 GO:0061630
Spst9g00553 528 Pfam U-box domain 143 213 IPR003613 GO:0004842|GO:0016567
Spst9g00553 528 SUPERFAMILY RING/U-box 140 213 - -
Spst9g00553 528 Gene3D - 363 519 IPR011989 -
Spst9g00553 528 CDD RING-Ubox_PUB 144 196 IPR045210 -
Spst9g00553 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 225 IPR013083 -
Spst9g00553 528 SUPERFAMILY ARM repeat 312 509 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00553 Spst-Chr9 4908274 4912262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00553 128 528 U-box Gene Family AT3G49810 64.339 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00553 - - gmx:100808281 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00553 9 4908274 4912262 Spst9g00553 9 4908274 4912262 ECH