Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00548 ATGGTCCTCGATTTCTTTGAAGTGGACCCGACTAAGGGCTTATCTGATGCTGAGGTGCTCCAATCTCCTTTCATTTCCTTGTCGTATCGACTTTATGGGAATAACGTGCTGCCTGAAGATCAAAGAGCTCCATTTTGGAAATTGGTTTTGAAGCAATTTGATGATTTGCTTGTAAAGATACTGATTGCAGCTGCTCTTATATCTTTTATTCTGGCTTTAGTTAATGGAGAAACAGGCTTGATGGCATTTCTGGAGCCTTCCGTTATTCTGATGATATTGGCAGCAAATGCAGCAGTCGGAGTTATTACAGAATCAAATGCTGAAAAGGCTCTAGAGGAGCTGCGTGCCTATCAAGCTGATGTAGCTACTGTCTTGCGCAATGGTTGTTTTTCCATACTTCCTGCTACTGAACTTGTTCCTGGGGATATTGTGGAAGTTTCCGTGGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAGTTGCTAAGTAATCAAGTGCGTGTAGATCAAGCTATTCTTACAGGTGAGAGCAACTCCGTGGAGAAAGAGCTCAAAACAACCACAACAACTAATGCTGTGTACCAAGACAAAACAAATATTCTGTTCTCGGGTACGGTTATGGTTGCTGGTAGGGCAAGAGCTGTTGTGGTGGGAGTTGGTCCAAACACAGCCATGGGAAGCATAAGAGATTCAATGTTGCGAACAGAGGATGAGGCAACACCATTGAAAAAGAAGCTGGACGAGTTTGGTACCTTTTTGGCCAAGGTTATAGCAGGGATTTGTGTCTTGGTGTGGATTGTAAATATTGGTCACTTCCGTGACCCTTCTCATGGTGGTTTCTTACAAGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCAGAAGGGCTCCCTGCAGTTGTGACAACGTGTTTAGCTCTTGGAACAAAGCGCATGGCTAAGTTGAATGCCATTGTTCGCTCCTTACCATCGGTCGAGACGTTGGGCTGCACCACTGTTATTTGCAGTGACAAAACTGGGACCTTAACTACCAATATGATGTCAGTTGCAAAAGTGTGTGTTGTTGAATCTGCAAATCGTGGTCCTATTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGCATCATATTCGACAGTACAGGATTGCAGCTTGACTTTCCTGCTCAATTGCCTTGTCTTCTTCACATAGCAATGTGTTCTGCTCTCTGCAATGAATCAACCCTGCAGTATAATCCTGATAAAGGGAATTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTCTTGACAGAAAAGGTTGGTCTCCCTGGCTACAATTCTATGCCATCAGCCTTGAATATGTTGACTAAGCATGACCGTGCTTCATACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATACAAGTTTTGGAATTTTCTCGAGATCGGAAAATGATGAGTGTGCTTTGCAGCCGAAACCAGATGCATGTTTTGTTCTCAAAAGGTGCCCCGGAAAGTATAGTATCTAGATGTACAACCATTCTGTGCAACGATGATGGTTCCATTGTGCCTCTTTCCGCTGATGTTCGAGCAGAGCTGGACACAAGGTTTCACAGTTTTGCAGAAAAAGAAACATTAAGATGCCTTGCTTTGGCCCTTAAATGGATGCCCTCAGGTCAACAGTCATTGTCCTCTGATGATGAGAAGAATCTTACATTTATTGGGTTGGTTGGGATACTGGATCCTCCGAGAGATGAAGTAAGAAATGCAATGCTTTCGTGTATGACTGCTGGTATACGCGTCATAGTTGTCACTGGTGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATAGATTTTGCTGAACATTCTTACACGGCTTCTGAGTTTGAAGAACTTCCACCACTGCAACAAACTATAGCATTGCAACGTATGGCACTTTTCACTAGGGTTGAGCCTTCTCATAAAAGAATGCTGGTTGAGGCATTACAGCACCAGAATGAAGTGGTCACTTTAATCCCATTGACAAGAGTAGCACAACCAAATCACTGCTTGAGGCTTGATCTGGTGCCAGAAACACACTGCATGAGGCTGGAACAGGTCAGAGCCAGGCTAGGAAATCACTGGCCTGGGAGGAAATTGAAACGAAATGATAAGAAAAGGCATGTGAAATGTTTCCAGTGGAGGGATGGAAGTGAAGTGCTGACCGAGGAGCGTATGGAGGGAGAGGAGGACATCAATGCTTCTAATACAAAAAGGATGGGAAATCACAGTAATATCGATAGAATAGTGGGTGAGATAACGCAAGGAAAAACTTACCGAAACAAACCCATTCGTTGTATTGGATTGTCTGCGTTGGTTGCAATGACGGGTGATGGAGTTAATGATGCACCTGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTGGCTAAGAGTGCTTCAGACATGGTTCTGGCCGATGACAACTTTGCCTCTATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAATTTATTCGCTACATGATTTCTTCCAATATTGGCGAAGTAGTCTGTATATTTGTGGCTGCAGTGCTTGGAATACCGGACACCCTTGCCCCTAGTGTCTTTTCAGTGGTCCAGTTGCTTTGGGTCAATTTGGTTACTGACGGATTGCCTGCCACTGCTATTGGCTTCAATAAACAAGATTCTGATGTTATGAGGGTTAAGCCTAGAAAGACAAAGGAATTAACCTCAAGGGAGCATTTAATTTCCAAATTGGCTTATTTAAAGGGAGATATTCATTATTGTGATGAAGTGAATGAAGCCGTTGTAACAGGTTGGCTCTTCTTTCGCTATTTAGTAATAGGAGCTTATGTTGGCCTTGCTACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATAGTGGCCCTAAACTTCCATACACAGAACTGATGAACTTTGATACTTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTGCTTGTCGTAGTTGAGATGTTCAATGCTTTGAACAATCTTAGTGAAAACCAATCTCTTCTAGTTATCCCTCCATGGAGTAACATGTGGCTTGTTGCTTCTATAATTCTAACCATGCTTCTTCACATACTAATCTTATATGTTCACCCACTATCGGTTCTTTTCTCTGTAACACCATTATCATGGGCTGACTGGATAGTCGTCCTCTATCTTTCATTACCTGTTATAGTCATTGATGAAGTGTTGAAATTCTTCTCCAGAAATCCCATTGGTTTGAGATTCAGGTTATGGTTCAGGAGGTCTGATTTACTTCCAAAAAAAGAATTACATGACAAGTAA 3438 0.425 MVLDFFEVDPTKGLSDAEVLQSPFISLSYRLYGNNVLPEDQRAPFWKLVLKQFDDLLVKILIAAALISFILALVNGETGLMAFLEPSVILMILAANAAVGVITESNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIELLSNQVRVDQAILTGESNSVEKELKTTTTTNAVYQDKTNILFSGTVMVAGRARAVVVGVGPNTAMGSIRDSMLRTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLQGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMAKLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVESANRGPIVSEYSVSGTTYAPEGIIFDSTGLQLDFPAQLPCLLHIAMCSALCNESTLQYNPDKGNYEKIGESTEVALRVLTEKVGLPGYNSMPSALNMLTKHDRASYCNHYWEEQFRKIQVLEFSRDRKMMSVLCSRNQMHVLFSKGAPESIVSRCTTILCNDDGSIVPLSADVRAELDTRFHSFAEKETLRCLALALKWMPSGQQSLSSDDEKNLTFIGLVGILDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDQLIDFAEHSYTASEFEELPPLQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVTLIPLTRVAQPNHCLRLDLVPETHCMRLEQVRARLGNHWPGRKLKRNDKKRHVKCFQWRDGSEVLTEERMEGEEDINASNTKRMGNHSNIDRIVGEITQGKTYRNKPIRCIGLSALVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPSVFSVVQLLWVNLVTDGLPATAIGFNKQDSDVMRVKPRKTKELTSREHLISKLAYLKGDIHYCDEVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVASIILTMLLHILILYVHPLSVLFSVTPLSWADWIVVLYLSLPVIVIDEVLKFFSRNPIGLRFRLWFRRSDLLPKKELHDK 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00548 1145 PANTHER CALCIUM-TRANSPORTING ATPASE 957 1121 - -
Spst9g00548 1145 Gene3D - 955 1123 - -
Spst9g00548 1145 Gene3D - 51 125 - -
Spst9g00548 1145 FunFam Calcium-transporting ATPase 351 588 - -
Spst9g00548 1145 SFLD Haloacid Dehalogenase 336 684 - -
Spst9g00548 1145 Gene3D - 215 371 - -
Spst9g00548 1145 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 348 585 IPR023299 GO:0000166
Spst9g00548 1145 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 953 1124 - -
Spst9g00548 1145 Gene3D - 589 687 IPR023214 -
Spst9g00548 1145 Pfam Cation transport ATPase (P-type) 411 520 - -
Spst9g00548 1145 SUPERFAMILY HAD-like 338 866 IPR036412 -
Spst9g00548 1145 FunFam Calcium-transporting ATPase, putative 210 337 - -
Spst9g00548 1145 Gene3D - 126 214 - -
Spst9g00548 1145 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 800 952 - -
Spst9g00548 1145 SMART Cation_ATPase_N_a_2 2 73 IPR004014 -
Spst9g00548 1145 FunFam Calcium-transporting ATPase 108 233 - -
Spst9g00548 1145 Coils Coil 107 127 - -
Spst9g00548 1145 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 1120 IPR023298 -
Spst9g00548 1145 Pfam E1-E2 ATPase 118 320 - -
Spst9g00548 1145 ProSitePatterns E1-E2 ATPases phosphorylation site. 343 349 IPR018303 -
Spst9g00548 1145 Gene3D - 781 948 - -
Spst9g00548 1145 SUPERFAMILY Calcium ATPase, transduction domain A 120 231 IPR008250 -
Spst9g00548 1145 Gene3D - 372 588 IPR023299 GO:0000166
Spst9g00548 1145 Pfam haloacid dehalogenase-like hydrolase 801 847 - -
Spst9g00548 1145 PRINTS P-type cation-transporting ATPase superfamily signature 827 839 - -
Spst9g00548 1145 PRINTS P-type cation-transporting ATPase superfamily signature 169 183 - -
Spst9g00548 1145 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Spst9g00548 1145 PRINTS P-type cation-transporting ATPase superfamily signature 341 355 - -
Spst9g00548 1145 Pfam Cation transporter/ATPase, N-terminus 2 68 IPR004014 -
Spst9g00548 1145 NCBIfam HAD-IC family P-type ATPase 799 892 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst9g00548 1145 NCBIfam HAD-IC family P-type ATPase 88 364 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst9g00548 1145 Pfam Cation transporting ATPase, C-terminus 959 1118 IPR006068 -
Spst9g00548 1145 Pfam Cation transporting ATPase, C-terminus 892 940 IPR006068 -
Spst9g00548 1145 Pfam haloacid dehalogenase-like hydrolase 578 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00548 Spst-Chr9 4852717 4882461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00548 2 686 Primary Pumps ATPases(2) AT1G10130 80.000 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00548 K05853 - gmx:100783509 1234.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00548 9 4852717 4882461 Spst9g00548 9 4852717 4882461 ECH