Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00543 ATGTCCGCGAGACGCGGTGGCAACAACGGGATGCGGCGGCACGCGGACGGGGCGGCACAGCAAACGTGGCAGAAGTGCGAGAGAAGAGGGGAAGTGGTAAACGTAGTGAGAGAACAGGGAAATATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTACCTGGTTGATAAGTTAACTGCGGATAACCGAGTGTTCCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGTAAGCCACACTTCGACCAACTGTTCAAGAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCGGAAAAAACTGGCGATGAGAAACCTGCATCAACCAAAGTCATAAATATGTTTGGTGGAACCAGAGATAAATGTGCCGGTTGTCAGAAGACAGTGTATCCCACTGAAAAGGTCACTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGCGGGTGTGTTATTAGTCCCTCCAATTACATTGCACACGATGGCAAACTCTACTGCAAGCACCACCACATCCAATTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAGTGCAATTCAAGAGAAAACCAACGGTGAAGTAGTTGCAGCTGAGACATGA 714 0.465 MSARRGGNNGMRRHADGAAQQTWQKCERRGEVVNVVREQGNMAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGDEKPASTKVINMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHEKSAIQEKTNGEVVAAET 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00543 237 CDD LIM1_SF3 47 109 - -
Spst9g00543 237 Pfam LIM domain 51 105 IPR001781 -
Spst9g00543 237 Pfam LIM domain 150 204 IPR001781 -
Spst9g00543 237 FunFam LIM domain and actin-binding 1 144 214 - -
Spst9g00543 237 FunFam LIM domain and actin-binding 1 45 115 - -
Spst9g00543 237 Gene3D Cysteine Rich Protein 145 214 - -
Spst9g00543 237 Gene3D Cysteine Rich Protein 45 115 - -
Spst9g00543 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 44 76 - -
Spst9g00543 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 77 117 - -
Spst9g00543 237 ProSiteProfiles LIM domain profile. 148 208 IPR001781 -
Spst9g00543 237 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g00543 237 ProSiteProfiles LIM domain profile. 49 109 IPR001781 -
Spst9g00543 237 PANTHER OS06G0237300 PROTEIN 17 134 - -
Spst9g00543 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 175 - -
Spst9g00543 237 CDD LIM2_SF3 150 210 - -
Spst9g00543 237 ProSitePatterns LIM zinc-binding domain signature. 51 85 IPR001781 -
Spst9g00543 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 215 - -
Spst9g00543 237 SMART lim_4 149 201 IPR001781 -
Spst9g00543 237 SMART lim_4 50 102 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00543 Spst-Chr9 4799607 4802815 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Spst9g00543 LIM 3.8e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00543 K09377 - gmx:100499957 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00543 9 4799607 4802815 Spst9g00543 9 4799607 4802815 ECH