Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00540 ATGTTGTGCGCTTGTTCTTCCGGTGAGCAGTTTAAATTCGAAGAGCCGCCGCAGTCGCCGGATTCCCTCGCCACCAGGGATTTCTCCGCTAGCGGACTCTCTTCCAGGAACACCGGGGAGTGGGAACCTAAGTTCGATGAAACGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAGCTCTCTCCTTAAATTATGAGGAGGCTAGGGCTTTGTTGGGGAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACCCCAAGAATGATCAAGGCTATTGCTGAAAGAACCAAGCAAAGGAAACCACGTTCCAAGGCAGACATCGTGGTTTCGAATGTGATGTCTTTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTCAAAGCAAGGTCATTGGAGGAACTTGGGGAATACATCGAGGCTGCAAAGGAGTGCAGAATAGTTCTTGATACAATTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGCGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGCCTGTGGATCAAAGCAGGATTTCTTGATGAAGCTGTAGCTGGATATCGTCGTGCTCTGCTCAAGCCATGGAATTTGGAGCCACAAAGGTTGGCTGCTGTACAAAAAGATTTAGCTACGATACTACTCTATGGCGGTGTTGAAGTTAGCCTATCCTCTCAGTTGCATGTCTGGGGTAAGACAACACCTGAGAGTAGTGTTGAAGAGGCAATACTTTTGCTAGTATTACTCATGAGCAAGGTGGCAATACGGGAAATAGATTGGGATGCTGAAATAATGGATCATCTTACCTTTGCACTTTCAGTCAGTGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATTCTTCCTGGTATCTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATAATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGTGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCTCTCATTTTTGTTTGGGGCAAAACTCTGTTCCTTAGATCCTCGCCATGCTCATGAAGGCGTTAACTTTTCACGTAAAGTTATTGAGCTAGCTCAGCGCCAAAATGAGCATTTTCTGAGTCAAGGCCATAAATTTCTTGGCATCTCCTATGGTGCTGCAGCTAGAATTTCTGTACTCGATTCTGAAAGAAGTATATTTCAAGGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGTAAATGGAAATGATGACCTGGAAGCAATATTCAGCCTTGGACTAGAAAATGCAATTCAACGGAATCTGGATGCAGCTTACAACAACATAATGATGTTCTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGAAGCTCTTAGCACTTATAGTATCTGCACAGAAGCGGTTTAAGGATGCTGAGACTATAGTTGATTTTGCTTTAGATGAGGCCGGGGGAATGGATCAACTTGATCTTCTGAGATTGAAAGCAGTACTTCAAATTGCTCAGCTGCAACCCAGGCAAGCGATAGAGACATATAGGATCTTGCTTGCACTAATTCAAGCAAAAAAGGAGCTTTGGCTTCATGATAACAACATAGATCTAGAACAAGTATTTGTGCATGAGGCATTAACAGAAAGGAAGGTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATAAAGATATCGGTTCCCTGCTTGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAAAATTTTTTTCTCCAAGAAGTTGGCATATTACAGGGGTGGTGCTTGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTCTCAATATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCTACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGGTTAGAACCTACGAACCATGATGCTTGGTTCAACCTTGGTTTGGTTTCAAAAACGGAAGGTTTATTACAACAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGGAGCTTTCATCTCCAGTGCAAAAATTTTAA 2148 0.4255 MLCACSSGEQFKFEEPPQSPDSLATRDFSASGLSSRNTGEWEPKFDETQVEQAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERTKQRKPRSKADIVVSNVMSLHSVSLLLEAILLKARSLEELGEYIEAAKECRIVLDTIESALPNGMPEGIGEDCKLQEMFHKALELLPSLWIKAGFLDEAVAGYRRALLKPWNLEPQRLAAVQKDLATILLYGGVEVSLSSQLHVWGKTTPESSVEEAILLLVLLMSKVAIREIDWDAEIMDHLTFALSVSGMFELLADHVEQILPGIYSRAERWYFLALCYSAAGHNEVALNLLRKACGSSEANHRPHFLSFLFGAKLCSLDPRHAHEGVNFSRKVIELAQRQNEHFLSQGHKFLGISYGAAARISVLDSERSIFQGESLDSLNCAAVNGNDDLEAIFSLGLENAIQRNLDAAYNNIMMFSDMTVGSSRGWKLLALIVSAQKRFKDAETIVDFALDEAGGMDQLDLLRLKAVLQIAQLQPRQAIETYRILLALIQAKKELWLHDNNIDLEQVFVHEALTERKVEMEAWQDLATIYKDIGSLLDAKTCVDKAQLIKFFSPRSWHITGVVLEAQSLYKEAFVSFSISLSIEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKTEGLLQQAAEFFQAAYELELSSPVQKF 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00540 715 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Spst9g00540 715 Pfam Tetratricopeptide repeat 678 707 IPR019734 GO:0005515
Spst9g00540 715 SUPERFAMILY TPR-like 48 344 IPR011990 GO:0005515
Spst9g00540 715 Gene3D Tetratricopeptide repeat domain 425 712 IPR011990 GO:0005515
Spst9g00540 715 Gene3D Tetratricopeptide repeat domain 31 243 IPR011990 GO:0005515
Spst9g00540 715 SUPERFAMILY TPR-like 574 707 IPR011990 GO:0005515
Spst9g00540 715 SMART tpr_5 476 509 IPR019734 GO:0005515
Spst9g00540 715 SMART tpr_5 677 710 IPR019734 GO:0005515
Spst9g00540 715 SMART tpr_5 319 352 IPR019734 GO:0005515
Spst9g00540 715 SMART tpr_5 607 640 IPR019734 GO:0005515
Spst9g00540 715 SMART tpr_5 135 168 IPR019734 GO:0005515
Spst9g00540 715 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Spst9g00540 715 MobiDBLite consensus disorder prediction 22 38 - -
Spst9g00540 715 Pfam Tetratricopeptide repeat 49 91 - -
Spst9g00540 715 MobiDBLite consensus disorder prediction 1 46 - -
Spst9g00540 715 SUPERFAMILY TPR-like 428 600 IPR011990 GO:0005515
Spst9g00540 715 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00540 Spst-Chr9 4783446 4786729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00540 1 715 Calmodulin-binding Proteins AT1G27460 59.805 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00540 K21843 - gmx:100799251 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00540 9 4783446 4786729 Spst9g00540 9 4783446 4786729 ECH