Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00536 ATGGGTCCTACCCCGGAGCCTCCTTCGATAAATGTTGAACCCGTATATTGCCCTGAAGCGGTTATGCGATGGTACCATCTCACGTCACTACCAAACAGCAGGAGCCAATGTACATTACGCAGGAACCTCTCCTTACAGGCCAAGAAGCATCTTCGTTATCTGGGTTGGAAATTTTGGTATGTTGACAAGAAAGAAAAGTGGGAGTTGCGTTACACATCACCCATCAGCGGCAAAAATTACATTTCTCTCGCAAGGGCATGTAAAGGTTGCATAGAAGAGGGAGGTTGCAATGAAAACCCTCAAAATGTTAAAGAAAACAACATCCTTCATCACCAATACCCTACATCTTCTCAACCAAAAGAGGAGACAAGCGAATCCAGAAAGAAAACCAGGGTCTGCAAGAAAAGGCAAAGTGATGATGACGATGATAAGTCATTTGGAGATGCCACTAGCTCTGTGAATGGTAGAAGAGGTAAGGTCTTGCGGTCAATCAAAAGAATGAGGCAAGAGGGCGAGGCACAGGGTTCTAAGTGTTCACAACACCATCGTGGAACCCTTATCCCTTGGTTGATAAGTAACGGTGTCGTGGGTTTAGATTCCGTGGTACTCTGCCATGGTGCAAATAACGTGGTTAAGAAAGGGAAGCTATTGTGTAGTGGCATAGCTTGTGATTGCTGTGACATGTTATTCTCTCCCACTCGCTTTGAGGCTCATGCCGGGTGCAATAGGCACAGACCAAATGCTAGCATTATCTTGGAAGATGGAAGGTCATTGTTAGATTGTCAAAAGCAAGCCCTGGGTTCTCAACAAAACGGGAGTTGTTTTGAGAAAGAAGAGGAACTGGATGACAGTGAATATCAAAATGATAACTTTTGTGCCGTTTGTCGTTACGGTGGTGAACTAGTGTTGTGTGATCGATGCCCCTCTTCGTTTCACCTCAAGTGTTTAGGTTTAACCCATGTCCCTGATGGCGATTGGTTCTGCCCAGTTTGTTGTTGCAAAATTTGCAAGCGACCCAGATGCACAGATGATTGTGCTCATAATGTGGGTGCGAACAGTGTTTTAGTTTGTCATCAGTGTGAGGGTAGATACCATATTGGATGCTTAAAAGCTCCTGTACCAGCTTACACCAAGATGGGAAACGAGGAAGACCATTTTGGTAATGGGAATTGGCTCTGCAGTAGAGACTGTGAGAGGATATTTTTCAGTCTGCAGAGGCTTGTGGGAAAAACCATCAATGTTGCTGCAGAAAATCTTACTTGGACGCTGTTGAAGGCGGTGAAAAGGGATAGCAGTGGAGAAGATGATCTTACTTTGGATGGAGTTGAAGGTTTGAGTCAAAACGAAAGCAAGCTGAGTGTAGCTCTTGATGTATTGCGTGAGAGTTTTGACCCAGTTATTGATGCTTTTTCTGGTAGAGATATGATGGCTGATATTATTTTCAGCAGAGGTTCAGAACTCGATGATCGGTTGAACTTTCGCGGCTTTTATACTGTGGTTTTGGAGAGGGATAAGGAGGTGGTTTCTGTTGCCACTGTAAGGATTTTTGGCAAGAGGGTTGCGGAAATTCCATTTGTGGCTACTAGGATGCAGCGTAGAAGACAAGGATTGTGTAGCATCTTGATGTATGAGATCGAGAAGCTGTTAACTCACTTGGGGGTGGAGAGGTTGGTTTTGCCTTCCTCGTGCAGTGTGATAGACACTTGGACAAAATCATTTGATTTTTTAAGGATGAAACTTTCAGATAAGTCTCAGCTACTTGATTATGTTTTTCTGAACTTCGAGGGTACCATCATGTGCCACAAACACCTGGTGCAACAAACTTATATATGA 1833 0.4403 MGPTPEPPSINVEPVYCPEAVMRWYHLTSLPNSRSQCTLRRNLSLQAKKHLRYLGWKFWYVDKKEKWELRYTSPISGKNYISLARACKGCIEEGGCNENPQNVKENNILHHQYPTSSQPKEETSESRKKTRVCKKRQSDDDDDKSFGDATSSVNGRRGKVLRSIKRMRQEGEAQGSKCSQHHRGTLIPWLISNGVVGLDSVVLCHGANNVVKKGKLLCSGIACDCCDMLFSPTRFEAHAGCNRHRPNASIILEDGRSLLDCQKQALGSQQNGSCFEKEEELDDSEYQNDNFCAVCRYGGELVLCDRCPSSFHLKCLGLTHVPDGDWFCPVCCCKICKRPRCTDDCAHNVGANSVLVCHQCEGRYHIGCLKAPVPAYTKMGNEEDHFGNGNWLCSRDCERIFFSLQRLVGKTINVAAENLTWTLLKAVKRDSSGEDDLTLDGVEGLSQNESKLSVALDVLRESFDPVIDAFSGRDMMADIIFSRGSELDDRLNFRGFYTVVLERDKEVVSVATVRIFGKRVAEIPFVATRMQRRRQGLCSILMYEIEKLLTHLGVERLVLPSSCSVIDTWTKSFDFLRMKLSDKSQLLDYVFLNFEGTIMCHKHLVQQTYI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00536 610 ProSiteProfiles Zinc finger PHD-type profile. 289 334 IPR019787 -
Spst9g00536 610 Gene3D - 447 607 - -
Spst9g00536 610 Pfam PHD-finger 291 333 IPR019787 -
Spst9g00536 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 332 IPR013083 -
Spst9g00536 610 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 442 595 IPR000182 GO:0016747
Spst9g00536 610 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 487 564 IPR016181 -
Spst9g00536 610 SMART PHD_3 333 397 IPR001965 -
Spst9g00536 610 SMART PHD_3 291 332 IPR001965 -
Spst9g00536 610 MobiDBLite consensus disorder prediction 121 147 - -
Spst9g00536 610 CDD NAT_SF 499 559 - -
Spst9g00536 610 MobiDBLite consensus disorder prediction 111 162 - -
Spst9g00536 610 SUPERFAMILY FYVE/PHD zinc finger 279 341 IPR011011 -
Spst9g00536 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 400 IPR013083 -
Spst9g00536 610 PANTHER PHD FINGER PROTEIN 12 18 607 IPR042163 GO:0003714|GO:0045892
Spst9g00536 610 Pfam Acetyltransferase (GNAT) family 492 570 IPR000182 GO:0016747
Spst9g00536 610 Pfam Tify domain binding domain 214 265 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00536 Spst-Chr9 4766837 4768669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00536 144 552 PHD Transcription Factor Family AT5G58610 41.505 1.11e-91 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst9g00536 Acetyltransf_1 1.7e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00536 - - vra:106760454 917.146