Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00530 ATGTTAACCACCGTCAACAACGACCATTCCTTCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGGCGAATTCCCCACTCCCTCCTCCGAGAGCCGCCGCCTCCTCATCGCCTGCGCCGCCGACAATTCCGACGAGTTCATTACCCACCTTGTTGTCAACCTCCACTCCTGTTCCATTGAGGAGCAGAAGCAAGCCACCATGGAAATCAGGTTACTCGCCAAGAACAAGCAAGAGAACCGCGTCAAGATCGCAAAAGCCGGCGCGATTAAACCCTTGATTTCACTTTTATCCTCGTCGTCGGACCTTCAGCTCCAGGAGTACGTGGTGACCGCGATTCTCAATCTCTCCCTCTGCGACGAGAACAAAGAGCTGATCAATTCCTCTGGAGCGGTGAAGCCGCTCGTGGGGGCGCTGGAGACGGGGACGGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTACGCCTCTCGCAGAGAGAGGAGGACAAGTTGGCGATAGGGAGGGCGGGGGCGATTCCGCCTCTGGTGAGGCTTCTGGAAGGTGGGGGGTTGCGCGGGAAGAAGGACGCGGCGACGGCGCTGTACGCGTTGTGTTCGGTGAAGGAGAACAAGGTGAGAGCGGTGAGGGCGGGGATTATGAGGGTGCTGGTGGAACTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGTGTACGTGGTGAGCGTGGTGGTGGGGGTTGCGGAGGGGAGGGCGTCGCTGGTGGAGGAAGGGGGGATTCCGGTGGTGGTGGAGATAGTGGAGGTTGGGACGCAGAGGCAGAAGGAGATTGCGGTTGGGGTTCTGTTGCAGATTTGCGAGGAGAGTGTGGTGTACCGTACTATGGTGTCCCGCGAAGGAGCCATTCCACCCTTGGTTGCTCTGTCACAGTCACACTCCAATCGCGCCAAGCAAAAGGCTGAGAAACTAATAGAGCTTCTTCGGCAACCAAGATCCGGCAATGGCGCTGCTCCTACCTTCCAAATGTCACCATAA 1020 0.5882 MLTTVNNDHSFSAFSDCNSDRSGEFPTPSSESRRLLIACAADNSDEFITHLVVNLHSCSIEEQKQATMEIRLLAKNKQENRVKIAKAGAIKPLISLLSSSSDLQLQEYVVTAILNLSLCDENKELINSSGAVKPLVGALETGTATAKENAACALLRLSQREEDKLAIGRAGAIPPLVRLLEGGGLRGKKDAATALYALCSVKENKVRAVRAGIMRVLVELMADLGSSMVDKAVYVVSVVVGVAEGRASLVEEGGIPVVVEIVEVGTQRQKEIAVGVLLQICEESVVYRTMVSREGAIPPLVALSQSHSNRAKQKAEKLIELLRQPRSGNGAAPTFQMSP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00530 339 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 88 131 IPR000225 GO:0005515
Spst9g00530 339 PANTHER U BOX DOMAIN-CONTAINING 47 323 - -
Spst9g00530 339 Gene3D - 127 329 IPR011989 -
Spst9g00530 339 Pfam Armadillo/beta-catenin-like repeat 78 117 IPR000225 GO:0005515
Spst9g00530 339 Pfam Armadillo/beta-catenin-like repeat 120 158 IPR000225 GO:0005515
Spst9g00530 339 Pfam Armadillo/beta-catenin-like repeat 162 199 IPR000225 GO:0005515
Spst9g00530 339 SUPERFAMILY ARM repeat 45 320 IPR016024 -
Spst9g00530 339 Gene3D - 43 126 IPR011989 -
Spst9g00530 339 SMART arm_5 201 241 IPR000225 GO:0005515
Spst9g00530 339 SMART arm_5 242 282 IPR000225 GO:0005515
Spst9g00530 339 SMART arm_5 77 118 IPR000225 GO:0005515
Spst9g00530 339 SMART arm_5 119 159 IPR000225 GO:0005515
Spst9g00530 339 SMART arm_5 160 200 IPR000225 GO:0005515
Spst9g00530 339 FunFam RING-type E3 ubiquitin transferase 37 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00530 Spst-Chr9 4663304 4664494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00530 28 329 U-box Gene Family AT2G23140 48.344 2.25e-81 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00530 - - gmx:100782449 463.766